Variant report

Variant	rs12420907
Chromosome Location	chr11:85277870-85277871
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10501595	0.87[JPT][hapmap]
rs1072253	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1118578	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11234359	1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11603984	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604028	0.99[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11605203	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1192	0.90[CHD][hapmap];0.80[JPT][hapmap]
rs1214001	0.90[CHD][hapmap];0.80[JPT][hapmap]
rs12419172	0.81[CHD][hapmap];0.87[JPT][hapmap]
rs1354397	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1425223	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1504029	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs166998	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17208492	0.90[CHD][hapmap];0.87[JPT][hapmap]
rs17208519	0.87[JPT][hapmap]
rs17810659	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1847433	0.80[AMR][1000 genomes]
rs1863256	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs188311	0.82[JPT][hapmap]
rs1892872	0.87[JPT][hapmap]
rs1954757	0.89[ASN][1000 genomes]
rs1991923	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs2081445	0.82[AMR][1000 genomes]
rs2162055	0.83[ASN][1000 genomes]
rs2290823	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs2467059	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs2512803	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286508	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs286510	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286515	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs286526	0.96[EUR][1000 genomes]
rs286535	0.83[EUR][1000 genomes]
rs286542	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs290175	0.82[JPT][hapmap]
rs290177	0.87[JPT][hapmap]
rs290182	0.87[JPT][hapmap]
rs290186	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs290194	0.82[JPT][hapmap]
rs290196	0.82[JPT][hapmap]
rs290199	0.82[JPT][hapmap]
rs4280023	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4301809	0.94[AFR][1000 genomes]
rs4943923	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4943925	0.85[JPT][hapmap]
rs4944520	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4944529	0.89[CHD][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs4944531	0.89[CHD][hapmap];0.87[JPT][hapmap]
rs497698	0.83[ASN][1000 genomes]
rs537266	0.82[JPT][hapmap]
rs55739259	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55933855	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56073783	0.82[ASN][1000 genomes]
rs56256400	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56273824	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56321405	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56579	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs56737296	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57223077	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs57549298	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs578324	0.82[JPT][hapmap]
rs583122	0.81[JPT][hapmap]
rs58757261	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59082411	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60484561	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60838923	0.84[ASN][1000 genomes]
rs61133973	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61286868	0.81[ASN][1000 genomes]
rs613973	0.84[JPT][hapmap]
rs650036	0.82[JPT][hapmap]
rs653559	0.82[JPT][hapmap]
rs6592252	0.81[ASN][1000 genomes]
rs6592253	0.81[ASN][1000 genomes]
rs688741	0.82[JPT][hapmap]
rs7108132	0.81[ASN][1000 genomes]
rs7108137	0.82[ASN][1000 genomes]
rs7116340	0.80[EUR][1000 genomes]
rs7119372	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119617	0.83[CHD][hapmap];0.80[JPT][hapmap]
rs7120523	0.82[AMR][1000 genomes]
rs73499156	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73499163	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7925739	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7939217	0.85[ASN][1000 genomes]
rs7943586	0.93[CHD][hapmap];0.87[JPT][hapmap]
rs7948778	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs881121	0.90[CHD][hapmap];0.87[JPT][hapmap]
rs947861	0.90[CHD][hapmap];0.87[JPT][hapmap]
rs947863	0.90[CHD][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv898046	chr11:85180409-85300458	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv898049	chr11:85231475-85292310	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85248800-85292000	Weak transcription	Aorta	Aorta
2	chr11:85261400-85284000	Weak transcription	Left Ventricle	heart
3	chr11:85273200-85282400	Weak transcription	Ovary	ovary

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