Variant report
| Variant | rs195573 |
|---|---|
| Chromosome Location | chr2:53473204-53473205 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs13421013 | 0.84[ASN][1000 genomes] |
| rs1364662 | 0.81[ASN][1000 genomes] |
| rs1364663 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1559631 | 0.84[ASN][1000 genomes] |
| rs171877 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1834277 | 0.93[ASN][1000 genomes] |
| rs1863178 | 0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1863179 | 0.88[ASN][1000 genomes] |
| rs1863180 | 0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs195572 | 0.80[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs195574 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs195576 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs195577 | 0.95[ASN][1000 genomes] |
| rs195581 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs195588 | 0.86[ASN][1000 genomes] |
| rs195589 | 0.86[ASN][1000 genomes] |
| rs195590 | 0.86[ASN][1000 genomes] |
| rs195591 | 0.86[ASN][1000 genomes] |
| rs195592 | 0.82[ASN][1000 genomes] |
| rs195593 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2113420 | 0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7562698 | 0.87[ASN][1000 genomes] |
| rs7574564 | 0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs933786 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs933788 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751897 | chr2:53358205-53475338 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1002145 | chr2:53387912-53832213 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv535718 | chr2:53387912-53832213 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:53471800-53480400 | Weak transcription | Pancreas | Pancrea |
