Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13421013	0.93[ASN][1000 genomes]
rs1364663	0.85[ASN][1000 genomes]
rs171877	0.85[ASN][1000 genomes]
rs1834277	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1863178	0.85[ASN][1000 genomes]
rs1863179	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1863180	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs195572	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs195573	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs195574	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs195576	0.88[ASN][1000 genomes]
rs195577	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs195588	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195589	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195590	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195591	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195592	0.95[ASN][1000 genomes]
rs195593	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2113420	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7562698	0.81[ASN][1000 genomes]
rs7574564	0.85[ASN][1000 genomes]
rs933786	0.82[ASN][1000 genomes]
rs933788	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1013201	chr2:53473426-53553384	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv522095	chr2:53475338-53551600	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv522463	chr2:53475338-53551600	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53471800-53480400	Weak transcription	Pancreas	Pancrea
2	chr2:53475000-53479000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:53476000-53479000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:53477000-53477400	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr2:53477200-53480000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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