Variant report

Variant	rs1957569
Chromosome Location	chr14:68727506-68727507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68718502..68724365-chr14:68724697..68730654,11	MCF-7	breast:
2	chr14:68725759..68728590-chr14:68771718..68773261,2	MCF-7	breast:
3	chr14:68725759..68727922-chr14:68735191..68737141,2	MCF-7	breast:
4	chr14:68710991..68712652-chr14:68725529..68728244,2	MCF-7	breast:
5	chr14:68727324..68729014-chr14:69259740..69261463,2	MCF-7	breast:
6	chr14:68727081..68730048-chr14:68748759..68751215,2	MCF-7	breast:
7	chr14:68726719..68728326-chr14:68728463..68730963,2	MCF-7	breast:
8	chr14:68406185..68411686-chr14:68720403..68727836,10	MCF-7	breast:
9	chr14:68726780..68728843-chr14:69282092..69284748,2	MCF-7	breast:
10	chr14:68721191..68725230-chr14:68727220..68729721,4	MCF-7	breast:
11	chr14:68726546..68729527-chr14:68773268..68775241,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10131490	0.81[EUR][1000 genomes]
rs17105278	0.81[EUR][1000 genomes]
rs1885013	0.87[AMR][1000 genomes]
rs1950897	0.87[AMR][1000 genomes]
rs1957570	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2104047	0.87[AMR][1000 genomes]
rs28498223	0.83[EUR][1000 genomes]
rs3784099	0.83[AMR][1000 genomes]
rs7148416	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7148882	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8015139	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs911263	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68718600-68727600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:68718600-68727800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:68718800-68730600	Weak transcription	Fetal Intestine Large	intestine
4	chr14:68718800-68730600	Weak transcription	Small Intestine	intestine
5	chr14:68722400-68739800	Weak transcription	Gastric	stomach
6	chr14:68722800-68727600	Weak transcription	Primary B cells from cord blood	blood
7	chr14:68723000-68727800	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:68723200-68728400	Weak transcription	Ovary	ovary
9	chr14:68723400-68730400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:68723400-68736000	Weak transcription	Aorta	Aorta
11	chr14:68723600-68727600	Weak transcription	HUVEC	blood vessel
12	chr14:68723600-68730400	Weak transcription	Fetal Kidney	kidney
13	chr14:68724800-68727800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr14:68724800-68730000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr14:68725000-68727600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr14:68725000-68727800	Enhancers	Primary T cells from cord blood	blood
17	chr14:68725000-68728000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr14:68725000-68729200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr14:68725000-68731200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr14:68725400-68727600	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr14:68725400-68727600	Enhancers	GM12878-XiMat	blood
22	chr14:68725400-68730200	Enhancers	Fetal Thymus	thymus
23	chr14:68725400-68731000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr14:68725400-68731000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr14:68725400-68731200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:68725400-68731200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:68725400-68731400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr14:68725400-68731600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr14:68725400-68731800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:68725600-68728600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr14:68725800-68727800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:68726000-68734600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr14:68726200-68729800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr14:68726200-68730000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr14:68726400-68729000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:68726400-68731800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:68726600-68728800	Enhancers	Fetal Stomach	stomach
38	chr14:68726600-68730000	Enhancers	Primary B cells from peripheral blood	blood
39	chr14:68726600-68730600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr14:68726600-68730600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr14:68726800-68728800	Enhancers	Rectal Smooth Muscle	rectum
42	chr14:68726800-68731000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:68726800-68731000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:68727000-68729200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr14:68727000-68729400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr14:68727000-68729600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:68727000-68729600	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr14:68727200-68727800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr14:68727200-68728000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr14:68727200-68728000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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