Variant report

Variant	rs17105278
Chromosome Location	chr14:68728479-68728480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68718502..68724365-chr14:68724697..68730654,11	MCF-7	breast:
2	chr14:68725759..68728590-chr14:68771718..68773261,2	MCF-7	breast:
3	chr14:68726719..68728326-chr14:68728463..68730963,2	MCF-7	breast:
4	chr14:68727324..68729014-chr14:69259740..69261463,2	MCF-7	breast:
5	chr14:68727081..68730048-chr14:68748759..68751215,2	MCF-7	breast:
6	chr14:68728077..68730051-chr14:68734736..68736706,2	MCF-7	breast:
7	chr14:68726780..68728843-chr14:69282092..69284748,2	MCF-7	breast:
8	chr14:68722518..68726023-chr14:68727697..68732553,5	K562	blood:
9	chr14:68721191..68725230-chr14:68727220..68729721,4	MCF-7	breast:
10	chr14:68726546..68729527-chr14:68773268..68775241,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10131490	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1108007	0.85[CHB][hapmap]
rs17105463	0.85[CHB][hapmap]
rs17105469	0.85[CHB][hapmap]
rs17105515	0.85[CHB][hapmap]
rs1885013	0.90[EUR][1000 genomes]
rs1950897	0.90[EUR][1000 genomes]
rs1957569	0.81[EUR][1000 genomes]
rs1957570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104047	0.90[EUR][1000 genomes]
rs2208397	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28498223	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784097	0.93[ASN][1000 genomes]
rs3784099	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs7148416	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7148882	0.98[EUR][1000 genomes]
rs8008961	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8015139	0.98[EUR][1000 genomes]
rs911263	0.95[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68718800-68730600	Weak transcription	Fetal Intestine Large	intestine
2	chr14:68718800-68730600	Weak transcription	Small Intestine	intestine
3	chr14:68722400-68739800	Weak transcription	Gastric	stomach
4	chr14:68723400-68730400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:68723400-68736000	Weak transcription	Aorta	Aorta
6	chr14:68723600-68730400	Weak transcription	Fetal Kidney	kidney
7	chr14:68724800-68730000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr14:68725000-68729200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr14:68725000-68731200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr14:68725400-68730200	Enhancers	Fetal Thymus	thymus
11	chr14:68725400-68731000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr14:68725400-68731000	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr14:68725400-68731200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:68725400-68731200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:68725400-68731400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr14:68725400-68731600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr14:68725400-68731800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:68725600-68728600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:68726000-68734600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:68726200-68729800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr14:68726200-68730000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr14:68726400-68729000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:68726400-68731800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:68726600-68728800	Enhancers	Fetal Stomach	stomach
25	chr14:68726600-68730000	Enhancers	Primary B cells from peripheral blood	blood
26	chr14:68726600-68730600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr14:68726600-68730600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr14:68726800-68728800	Enhancers	Rectal Smooth Muscle	rectum
29	chr14:68726800-68731000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:68726800-68731000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:68727000-68729200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:68727000-68729400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr14:68727000-68729600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:68727000-68729600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr14:68727200-68728600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr14:68727200-68728600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr14:68727200-68729000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr14:68727200-68730000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:68727400-68728600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr14:68727400-68729000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:68727400-68729200	Enhancers	Primary hematopoietic stem cells	blood
42	chr14:68727400-68729400	Enhancers	Thymus	Thymus
43	chr14:68727400-68732200	Enhancers	Fetal Lung	lung
44	chr14:68727600-68728600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr14:68727600-68728800	Enhancers	Primary B cells from cord blood	blood
46	chr14:68727600-68729200	Enhancers	HUVEC	blood vessel
47	chr14:68727800-68728600	Enhancers	Colon Smooth Muscle	Colon
48	chr14:68727800-68728600	Enhancers	Fetal Muscle Leg	muscle
49	chr14:68727800-68729400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr14:68728200-68728600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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