Variant report

Variant	rs17105463
Chromosome Location	chr14:68825865-68825866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68818141..68819733-chr14:68823744..68826518,2	MCF-7	breast:
2	chr14:68819003..68821969-chr14:68824921..68827031,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1108007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11846360	1.00[JPT][hapmap]
rs11847185	1.00[JPT][hapmap]
rs11849916	1.00[JPT][hapmap]
rs17105278	0.85[CHB][hapmap]
rs17105469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105522	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17105675	1.00[JPT][hapmap]
rs17755657	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17755734	1.00[JPT][hapmap]
rs17755752	1.00[JPT][hapmap]
rs17828685	1.00[AFR][1000 genomes]
rs17828691	1.00[JPT][hapmap]
rs17828721	1.00[JPT][hapmap]
rs17828763	1.00[JPT][hapmap]
rs1956535	1.00[JPT][hapmap]
rs1957570	0.85[CHB][hapmap]
rs3784121	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:68816400-68826000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:68816400-68826200	Weak transcription	Pancreas	Pancrea
4	chr14:68816600-68826600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:68817400-68826200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:68824400-68827200	Enhancers	Fetal Kidney	kidney
7	chr14:68824400-68828600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr14:68824400-68829400	Enhancers	Primary T cells from cord blood	blood
9	chr14:68824600-68828000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:68824800-68827200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr14:68824800-68827400	Enhancers	Fetal Lung	lung
12	chr14:68825000-68826000	Weak transcription	Fetal Brain Male	brain
13	chr14:68825000-68826200	Weak transcription	Thymus	Thymus
14	chr14:68825000-68826200	Enhancers	GM12878-XiMat	blood
15	chr14:68825000-68827200	Enhancers	Fetal Stomach	stomach
16	chr14:68825000-68827200	Enhancers	Spleen	Spleen
17	chr14:68825000-68827400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr14:68825000-68827800	Enhancers	Brain Anterior Caudate	brain
19	chr14:68825200-68826400	Weak transcription	Brain Germinal Matrix	brain
20	chr14:68825200-68827600	Enhancers	Colon Smooth Muscle	Colon
21	chr14:68825400-68827200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:68825400-68827800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr14:68825600-68826000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr14:68825600-68826200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:68825600-68826600	Enhancers	Primary hematopoietic stem cells	blood
26	chr14:68825600-68826800	Enhancers	Colonic Mucosa	Colon
27	chr14:68825600-68827000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:68825600-68827200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:68825600-68827200	Enhancers	Primary T cells fromperipheralblood	blood
30	chr14:68825600-68827200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:68825600-68827200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:68825600-68827200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:68825600-68827200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:68825600-68827400	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr14:68825600-68827400	Enhancers	Stomach Smooth Muscle	stomach
36	chr14:68825600-68827600	Enhancers	Aorta	Aorta
37	chr14:68825600-68827800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr14:68825600-68827800	Enhancers	Brain Hippocampus Middle	brain
39	chr14:68825600-68828000	Enhancers	Primary B cells from cord blood	blood
40	chr14:68825600-68828000	Enhancers	Fetal Intestine Large	intestine
41	chr14:68825600-68828000	Enhancers	Fetal Muscle Leg	muscle
42	chr14:68825600-68828000	Enhancers	Fetal Thymus	thymus
43	chr14:68825600-68828200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr14:68825600-68828400	Enhancers	Brain Substantia Nigra	brain
45	chr14:68825600-68832000	Enhancers	Primary B cells from peripheral blood	blood
46	chr14:68825800-68826000	Enhancers	H1 Cell Line	embryonic stem cell
47	chr14:68825800-68826000	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr14:68825800-68826200	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr14:68825800-68826400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:68825800-68826400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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