Variant report

Variant	rs17828685
Chromosome Location	chr14:68883881-68883882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68883175..68885283-chr14:68918450..68920761,2	MCF-7	breast:
2	chr14:68881675..68884365-chr14:69252579..69254360,2	MCF-7	breast:
3	chr14:68863146..68866898-chr14:68882756..68885018,4	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1108007	1.00[AFR][1000 genomes]
rs17105463	1.00[AFR][1000 genomes]
rs17105469	1.00[AFR][1000 genomes]
rs17105515	1.00[AFR][1000 genomes]
rs17105522	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68867200-68886400	Weak transcription	Dnd41	blood
2	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:68875400-68884200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr14:68877000-68885600	Weak transcription	Primary T cells from cord blood	blood
5	chr14:68877000-68886000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:68877200-68890600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:68877400-68885200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:68880000-68885000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:68880200-68885000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:68880200-68885000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:68880200-68885000	Weak transcription	NHEK	skin
12	chr14:68880400-68884200	Enhancers	Colon Smooth Muscle	Colon
13	chr14:68880400-68885000	Weak transcription	HMEC	breast
14	chr14:68880600-68884200	Enhancers	Fetal Stomach	stomach
15	chr14:68880800-68885800	Enhancers	Fetal Lung	lung
16	chr14:68881000-68886400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:68881000-68890600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr14:68881400-68887400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:68881800-68884200	Enhancers	Stomach Smooth Muscle	stomach
20	chr14:68881800-68886000	Enhancers	Fetal Muscle Leg	muscle
21	chr14:68882200-68884400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:68882200-68890000	Weak transcription	Small Intestine	intestine
23	chr14:68882400-68893400	Weak transcription	Fetal Intestine Small	intestine
24	chr14:68882800-68884000	Enhancers	Primary B cells from cord blood	blood
25	chr14:68883000-68886000	Enhancers	Fetal Kidney	kidney
26	chr14:68883200-68886200	Weak transcription	Fetal Thymus	thymus
27	chr14:68883400-68884400	Enhancers	Ovary	ovary
28	chr14:68883400-68884600	Enhancers	Esophagus	oesophagus
29	chr14:68883400-68885000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:68883400-68888200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr14:68883600-68884000	Enhancers	A549	lung
32	chr14:68883800-68884000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr14:68883800-68884400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:68883800-68884600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links