Variant report

Variant	rs17105469
Chromosome Location	chr14:68831910-68831911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68831265..68833449-chr14:68839230..68840971,2	K562	blood:
2	chr14:68605282..68608015-chr14:68828516..68831935,3	MCF-7	breast:
3	chr14:68829073..68831953-chr14:68862651..68864586,2	MCF-7	breast:
4	chr14:68655604..68658456-chr14:68831451..68833713,2	MCF-7	breast:
5	chr14:68773574..68776467-chr14:68830101..68831913,2	MCF-7	breast:
6	chr14:68829763..68832771-chr14:68932528..68934610,3	MCF-7	breast:
7	chr14:68827902..68830472-chr14:68830504..68833278,2	MCF-7	breast:
8	chr14:68830853..68833594-chr14:68845594..68847240,2	MCF-7	breast:
9	chr14:68829901..68834300-chr14:68923345..68927378,4	MCF-7	breast:
10	chr14:68830049..68833032-chr14:68833353..68836919,3	MCF-7	breast:

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1108007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11846360	1.00[JPT][hapmap]
rs11847185	1.00[JPT][hapmap]
rs11849916	1.00[JPT][hapmap]
rs17105278	0.85[CHB][hapmap]
rs17105463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105522	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17105675	1.00[JPT][hapmap]
rs17755657	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17755734	1.00[JPT][hapmap]
rs17755752	1.00[JPT][hapmap]
rs17828685	1.00[AFR][1000 genomes]
rs17828691	1.00[JPT][hapmap]
rs17828721	1.00[JPT][hapmap]
rs17828763	1.00[JPT][hapmap]
rs1956535	1.00[JPT][hapmap]
rs1957570	0.85[CHB][hapmap]
rs3784121	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68825600-68832000	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:68826200-68835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:68827200-68833000	Weak transcription	Psoas Muscle	Psoas
4	chr14:68827200-68833400	Weak transcription	Esophagus	oesophagus
5	chr14:68827200-68834200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:68827200-68834400	Weak transcription	Small Intestine	intestine
7	chr14:68827200-68834800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:68827400-68835000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr14:68828200-68835000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:68829600-68832000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr14:68829600-68832000	Enhancers	Fetal Thymus	thymus
12	chr14:68829600-68832200	Enhancers	Pancreas	Pancrea
13	chr14:68829600-68835400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:68829600-68837400	Enhancers	Primary hematopoietic stem cells	blood
15	chr14:68829600-68837400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:68829800-68832200	Enhancers	Fetal Intestine Small	intestine
17	chr14:68829800-68832400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:68829800-68833600	Enhancers	Primary T cells from cord blood	blood
19	chr14:68829800-68837400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr14:68830000-68835200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr14:68830200-68832000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:68830200-68832000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:68830200-68832000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr14:68830200-68832000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:68830200-68832000	Enhancers	Placenta	Placenta
26	chr14:68830200-68832000	Enhancers	Lung	lung
27	chr14:68830200-68832000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr14:68830200-68832000	Enhancers	Spleen	Spleen
29	chr14:68830200-68832200	Enhancers	Fetal Muscle Leg	muscle
30	chr14:68830200-68832200	Enhancers	Fetal Stomach	stomach
31	chr14:68830200-68832200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr14:68830200-68832200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr14:68830200-68833800	Enhancers	A549	lung
34	chr14:68830200-68834400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr14:68830200-68836200	Enhancers	Fetal Lung	lung
36	chr14:68830400-68832000	Enhancers	Right Atrium	heart
37	chr14:68830400-68832200	Enhancers	Fetal Heart	heart
38	chr14:68830400-68832200	Enhancers	Placenta Amnion	Placenta Amnion
39	chr14:68830400-68832400	Enhancers	Fetal Kidney	kidney
40	chr14:68830600-68832000	Enhancers	Aorta	Aorta
41	chr14:68830600-68832200	Enhancers	Fetal Intestine Large	intestine
42	chr14:68830600-68832400	Enhancers	Rectal Smooth Muscle	rectum
43	chr14:68830600-68833000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr14:68830600-68836800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:68830800-68832200	Enhancers	HepG2	liver
46	chr14:68830800-68833600	Enhancers	Colon Smooth Muscle	Colon
47	chr14:68830800-68835200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr14:68831000-68832000	Enhancers	Brain Angular Gyrus	brain
49	chr14:68831000-68832000	Enhancers	Fetal Brain Male	brain
50	chr14:68831000-68832000	Enhancers	Ovary	ovary

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