Variant report

Variant	rs17105522
Chromosome Location	chr14:68862360-68862361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68859762..68864000-chr14:68864300..68866609,3	K562	blood:
2	chr14:68860545..68863012-chr14:68924709..68926828,2	MCF-7	breast:
3	chr14:68862313..68866033-chr14:69260307..69264039,7	MCF-7	breast:
4	chr14:68605654..68608460-chr14:68861850..68864803,2	MCF-7	breast:
5	chr14:68858725..68872867-chr14:69250734..69263104,36	MCF-7	breast:
6	chr14:68861164..68863928-chr14:68868911..68870731,2	K562	blood:
7	chr14:68407825..68409663-chr14:68862342..68864207,2	MCF-7	breast:
8	chr14:68712152..68714666-chr14:68861670..68863441,2	MCF-7	breast:
9	chr11:62623040..62625036-chr14:68860166..68863068,2	MCF-7	breast:
10	chr14:68773029..68777937-chr14:68858584..68866534,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000255717	Chromatin interaction
ENSG00000168003	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1108007	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17105463	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17105469	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17105515	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17828685	1.00[AFR][1000 genomes]
rs35190649	0.88[ASN][1000 genomes]
rs3784121	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68847600-68862600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68852200-68864200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:68852400-68862600	Enhancers	Fetal Stomach	stomach
4	chr14:68854400-68863800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:68856400-68863000	Enhancers	Rectal Smooth Muscle	rectum
6	chr14:68856600-68865400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:68857000-68862600	Enhancers	Adipose Nuclei	Adipose
8	chr14:68857000-68865800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:68857200-68863200	Enhancers	Fetal Muscle Leg	muscle
10	chr14:68857600-68862600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr14:68858000-68862600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:68858000-68863000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:68858000-68863000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr14:68858000-68865200	Enhancers	NHLF	lung
15	chr14:68858000-68865800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr14:68858200-68865600	Enhancers	Placenta	Placenta
17	chr14:68858400-68862600	Enhancers	Fetal Intestine Large	intestine
18	chr14:68858400-68865200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:68858600-68862400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr14:68858600-68864200	Weak transcription	Pancreas	Pancrea
21	chr14:68858800-68865600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:68859000-68865400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:68859000-68865800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr14:68859200-68862800	Enhancers	GM12878-XiMat	blood
25	chr14:68859200-68865200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr14:68859600-68863800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:68859600-68864400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr14:68859800-68863000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr14:68859800-68863600	Weak transcription	HepG2	liver
30	chr14:68859800-68864000	Weak transcription	HSMMtube	muscle
31	chr14:68859800-68871400	Weak transcription	Gastric	stomach
32	chr14:68860000-68862600	Enhancers	Fetal Heart	heart
33	chr14:68860000-68863800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr14:68860000-68863800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr14:68860000-68863800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:68860200-68862800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr14:68860200-68863200	Enhancers	Fetal Lung	lung
38	chr14:68860600-68862400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:68860600-68862800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr14:68860600-68863000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:68860600-68863200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:68860600-68863600	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr14:68860600-68864600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:68860600-68865600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:68860800-68862600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr14:68860800-68862800	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr14:68860800-68862800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr14:68860800-68862800	Enhancers	Left Ventricle	heart
49	chr14:68860800-68863200	Enhancers	Ovary	ovary
50	chr14:68860800-68863800	Weak transcription	Duodenum Mucosa	Duodenum

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