Variant report

Variant	rs17828691
Chromosome Location	chr14:68886593-68886594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68867189..68869332-chr14:68884473..68886880,2	MCF-7	breast:
2	chr14:68885394..68888226-chr14:69257512..69260441,2	MCF-7	breast:
3	chr14:68878806..68882787-chr14:68883968..68886756,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1108007	1.00[JPT][hapmap]
rs11846360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11847185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11849916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468278	0.84[ASN][1000 genomes]
rs17105463	1.00[JPT][hapmap]
rs17105469	1.00[JPT][hapmap]
rs17105515	1.00[JPT][hapmap]
rs17105675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17755657	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs17755734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17755752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17828721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17828763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1956535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2331705	1.00[CEU][hapmap];0.84[ASN][1000 genomes]
rs34256824	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs35190649	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3784121	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7149983	0.84[ASN][1000 genomes]
rs73276281	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276290	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:68877200-68890600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:68881000-68890600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68881400-68887400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:68882200-68890000	Weak transcription	Small Intestine	intestine
6	chr14:68882400-68893400	Weak transcription	Fetal Intestine Small	intestine
7	chr14:68883400-68888200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:68884000-68890200	Weak transcription	Primary B cells from cord blood	blood
9	chr14:68884200-68890800	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:68884400-68887000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:68884600-68887200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:68884800-68886600	Enhancers	Ovary	ovary
13	chr14:68885000-68886600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:68885000-68886600	Enhancers	NHEK	skin
15	chr14:68885000-68886800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:68885200-68893600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:68885400-68887200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr14:68885600-68888000	Enhancers	Primary T cells from cord blood	blood
19	chr14:68885800-68887000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:68885800-68887000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr14:68885800-68887200	Weak transcription	Fetal Lung	lung
22	chr14:68885800-68887400	Weak transcription	Fetal Heart	heart
23	chr14:68885800-68889600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr14:68886000-68886600	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr14:68886000-68886600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr14:68886000-68886600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:68886000-68887200	Weak transcription	Fetal Kidney	kidney
28	chr14:68886000-68890600	Weak transcription	Fetal Muscle Leg	muscle
29	chr14:68886200-68886600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr14:68886200-68886600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr14:68886200-68886600	Enhancers	Fetal Thymus	thymus
32	chr14:68886200-68886800	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr14:68886200-68887000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr14:68886200-68888200	Enhancers	Spleen	Spleen
35	chr14:68886200-68894800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:68886400-68886600	Enhancers	Primary B cells from peripheral blood	blood
37	chr14:68886400-68886600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:68886400-68886600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr14:68886400-68886600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:68886400-68886600	Enhancers	Dnd41	blood
41	chr14:68886400-68887400	Enhancers	GM12878-XiMat	blood

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