Variant report

Variant	rs1958672
Chromosome Location	chr14:84426920-84426921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17646445	0.86[EUR][1000 genomes]
rs17647231	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999280	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1999281	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72699215	0.86[EUR][1000 genomes]
rs72699218	0.86[EUR][1000 genomes]
rs72699223	0.88[EUR][1000 genomes]
rs72699241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72699243	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72699247	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84419000-84436000	Weak transcription	Pancreas	Pancrea
2	chr14:84422600-84427200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:84424800-84427400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr14:84425000-84427000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:84425600-84428000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr14:84426200-84428800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:84426400-84429200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr14:84426800-84427000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr14:84426800-84427800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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