Variant report

Variant	rs72699223
Chromosome Location	chr14:84390190-84390191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17646445	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17647231	0.88[EUR][1000 genomes]
rs1958672	0.88[EUR][1000 genomes]
rs1999280	0.90[EUR][1000 genomes]
rs1999281	0.90[EUR][1000 genomes]
rs4899844	0.90[AFR][1000 genomes]
rs72699212	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72699215	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72699218	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72699241	0.90[EUR][1000 genomes]
rs72699243	0.90[EUR][1000 genomes]
rs72699247	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1037238	chr14:84376916-84407921	Enhancers Weak transcription Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv528927	chr14:84378369-84390391	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84390000-84390400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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