Variant report
| Variant | rs72699212 |
|---|---|
| Chromosome Location | chr14:84369888-84369889 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SEL1L-7 | chr14:84369854-84370035 | XLOC_011090 |
| 2 | lnc-SEL1L-7 | chr14:84369854-84370035 | XLOC_011090 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs1606129 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17646445 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1999280 | 0.81[EUR][1000 genomes] |
| rs1999281 | 0.81[EUR][1000 genomes] |
| rs2026204 | 0.87[EUR][1000 genomes] |
| rs72699204 | 0.87[EUR][1000 genomes] |
| rs72699215 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72699218 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72699223 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72699241 | 0.81[EUR][1000 genomes] |
| rs72699243 | 0.81[EUR][1000 genomes] |
| rs72699247 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902159 | chr14:84336944-84447356 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
