Variant report

Variant	rs1960179
Chromosome Location	chr11:9051901-9051902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10743097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1110216	0.98[ASN][1000 genomes]
rs1960180	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056902	0.98[ASN][1000 genomes]
rs3751058	0.96[ASN][1000 genomes]
rs3794150	0.93[ASN][1000 genomes]
rs3829273	0.95[ASN][1000 genomes]
rs66630602	0.91[ASN][1000 genomes]
rs72856020	0.95[ASN][1000 genomes]
rs72856021	0.95[ASN][1000 genomes]
rs72856025	0.98[ASN][1000 genomes]
rs72856027	0.96[ASN][1000 genomes]
rs72856029	0.98[ASN][1000 genomes]
rs72856037	0.98[ASN][1000 genomes]
rs72856040	0.98[ASN][1000 genomes]
rs72856076	0.90[ASN][1000 genomes]
rs72856081	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9038200-9064000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:9039000-9052000	Weak transcription	Spleen	Spleen
3	chr11:9039000-9058800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:9039600-9052000	Weak transcription	Lung	lung
5	chr11:9039600-9057800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:9041800-9052400	Weak transcription	Gastric	stomach
7	chr11:9043400-9059200	Weak transcription	Right Atrium	heart
8	chr11:9043800-9052400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:9045800-9052000	Weak transcription	Fetal Intestine Small	intestine
10	chr11:9047200-9068600	Weak transcription	Fetal Intestine Large	intestine
11	chr11:9047400-9052200	Weak transcription	Adipose Nuclei	Adipose
12	chr11:9047800-9058400	Weak transcription	HSMMtube	muscle
13	chr11:9049000-9052000	Weak transcription	Pancreas	Pancrea
14	chr11:9049000-9056600	Weak transcription	Fetal Lung	lung
15	chr11:9050200-9052400	Weak transcription	Esophagus	oesophagus
16	chr11:9050200-9052800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:9050400-9052800	Strong transcription	Stomach Smooth Muscle	stomach
18	chr11:9051000-9052000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:9051200-9052200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:9051200-9052600	Strong transcription	Fetal Muscle Leg	muscle
21	chr11:9051200-9053000	Strong transcription	Fetal Stomach	stomach
22	chr11:9051200-9054000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:9051400-9059000	Weak transcription	Placenta	Placenta
24	chr11:9051800-9052800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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