Variant report

Variant	rs72856021
Chromosome Location	chr11:9041011-9041012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9024101..9026165-chr11:9040413..9042169,2	K562	blood:
2	chr11:9027002..9028615-chr11:9038847..9041783,2	K562	blood:
3	chr11:9038205..9041771-chr11:9047082..9049951,3	MCF-7	breast:
4	chr11:9037545..9039567-chr11:9040874..9042397,2	K562	blood:

Variant related genes	Relation type
ENSG00000175352	Chromatin interaction
ENSG00000175356	Chromatin interaction
ENSG00000253973	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10743097	0.95[ASN][1000 genomes]
rs1110216	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1960179	0.95[ASN][1000 genomes]
rs1960180	0.95[ASN][1000 genomes]
rs2056902	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3751058	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3794150	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3829273	0.95[ASN][1000 genomes]
rs66630602	0.86[ASN][1000 genomes]
rs72856020	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72856025	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72856027	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72856029	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72856037	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72856040	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72856076	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72856081	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9034600-9041600	Weak transcription	Gastric	stomach
2	chr11:9035200-9051800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:9036600-9048400	Weak transcription	Pancreas	Pancrea
4	chr11:9037600-9041600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:9037600-9042200	Weak transcription	Right Ventricle	heart
6	chr11:9037600-9045000	Weak transcription	Fetal Brain Male	brain
7	chr11:9038200-9041400	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:9038200-9045200	Weak transcription	HSMMtube	muscle
9	chr11:9038200-9064000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:9038600-9041800	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:9038600-9047000	Weak transcription	Brain Substantia Nigra	brain
12	chr11:9038800-9047400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:9039000-9052000	Weak transcription	Spleen	Spleen
14	chr11:9039000-9058800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:9039200-9041600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:9039600-9042000	Weak transcription	Fetal Lung	lung
17	chr11:9039600-9048200	Weak transcription	Fetal Stomach	stomach
18	chr11:9039600-9049600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:9039600-9052000	Weak transcription	Lung	lung
20	chr11:9039600-9057800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:9039800-9043200	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:9039800-9043200	Weak transcription	Left Ventricle	heart
23	chr11:9039800-9044200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:9039800-9047200	Weak transcription	NHDF-Ad	bronchial
25	chr11:9040000-9042200	Weak transcription	Right Atrium	heart
26	chr11:9040000-9044200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:9040000-9045400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:9040000-9047000	Weak transcription	Adipose Nuclei	Adipose

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