Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81169740..81171464-chr3:149936210..149938859,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10143005	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1031299	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11846048	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12878836	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1449526	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1564940	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17541411	1.00[YRI][hapmap]
rs17613911	1.00[YRI][hapmap]
rs1976104	0.92[CEU][hapmap]
rs2060596	0.82[ASN][1000 genomes]
rs2371335	0.85[ASN][1000 genomes]
rs2371336	0.85[ASN][1000 genomes]
rs2596108	0.81[ASN][1000 genomes]
rs2619673	0.85[ASN][1000 genomes]
rs2619674	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2619676	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs55788709	0.87[EUR][1000 genomes]
rs72690946	0.87[EUR][1000 genomes]
rs72690950	0.87[EUR][1000 genomes]
rs8019534	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs992358	0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3499116	chr14:81170925-81171157	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3499117	chr14:81170925-81171157	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:81163200-81177800	Weak transcription	A549	lung
4	chr14:81166200-81180200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:81167400-81171000	Weak transcription	NHEK	skin
6	chr14:81167600-81174200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:81167600-81181400	Weak transcription	Fetal Thymus	thymus
8	chr14:81167800-81171200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:81168400-81171400	Weak transcription	HMEC	breast
10	chr14:81168400-81184200	Weak transcription	Thymus	Thymus
11	chr14:81169000-81175600	Weak transcription	Dnd41	blood

Quick Search: