Variant report

Variant	rs992358
Chromosome Location	chr14:81174506-81174507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10143005	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1031299	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11846048	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12878836	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs1449526	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1564940	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1960882	0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2371335	0.80[ASN][1000 genomes]
rs2371336	0.80[ASN][1000 genomes]
rs2619673	0.80[ASN][1000 genomes]
rs2619674	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2619676	0.80[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs8019534	0.80[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81163200-81177800	Weak transcription	A549	lung
2	chr14:81166200-81180200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:81167600-81181400	Weak transcription	Fetal Thymus	thymus
4	chr14:81168400-81184200	Weak transcription	Thymus	Thymus
5	chr14:81169000-81175600	Weak transcription	Dnd41	blood
6	chr14:81171000-81180600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:81172400-81185200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:81172600-81185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links