Variant report
| Variant | rs1962041 |
|---|---|
| Chromosome Location | chr11:93291685-93291686 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:93276670..93279805-chr11:93289602..93292268,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000166002 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs16919041 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1986399 | 0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2399677 | 0.92[EUR][1000 genomes] |
| rs3922939 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41357749 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4478953 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs4478954 | 1.00[CEU][hapmap] |
| rs55686330 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs55973666 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs56253870 | 0.86[ASN][1000 genomes] |
| rs56341227 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs58285216 | 0.82[EUR][1000 genomes] |
| rs58840964 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs60276987 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs60716650 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7124828 | 1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs73559569 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73559573 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73559576 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73561374 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7952670 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898181 | chr11:93072843-93662459 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039623 | chr11:93141461-93328739 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:93277200-93293000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
