Variant report

Variant	rs1986399
Chromosome Location	chr11:93282173-93282174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16919041	0.81[EUR][1000 genomes]
rs1962041	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2399677	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3922939	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41357749	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4478953	0.86[JPT][hapmap]
rs4478954	0.85[CEU][hapmap]
rs55686330	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55973666	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56341227	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58285216	0.93[EUR][1000 genomes]
rs58840964	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60276987	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60716650	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73559569	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73559573	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73559576	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73561374	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7952670	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93277200-93293000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:93281000-93282600	Enhancers	Fetal Intestine Small	intestine
3	chr11:93281200-93282400	Enhancers	GM12878-XiMat	blood
4	chr11:93281400-93283400	Enhancers	Fetal Intestine Large	intestine
5	chr11:93281600-93282400	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:93281800-93282400	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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