Variant report

Variant	rs1962481
Chromosome Location	chr11:73818092-73818093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73816999..73819163-chr11:73819784..73821810,2	K562	blood:
2	chr11:73808269..73810850-chr11:73816253..73818234,2	K562	blood:
3	chr11:73811219..73813367-chr11:73816186..73818398,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17132768	0.84[AFR][1000 genomes]
rs2129672	1.00[AMR][1000 genomes]
rs2886883	1.00[AMR][1000 genomes]
rs56877251	1.00[AMR][1000 genomes]
rs56971970	1.00[AMR][1000 genomes]
rs73552726	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73777600-73818600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
3	chr11:73782600-73823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:73785600-73823600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:73794600-73823600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:73795200-73818200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:73795200-73820600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:73795200-73823800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:73801600-73823600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:73802000-73831800	Weak transcription	Pancreas	Pancrea
11	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
12	chr11:73802400-73832000	Weak transcription	Fetal Heart	heart
13	chr11:73804000-73832400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
15	chr11:73805000-73823600	Weak transcription	Colonic Mucosa	Colon
16	chr11:73808200-73818400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:73808400-73818400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:73808800-73823600	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:73809800-73844400	Weak transcription	HMEC	breast
20	chr11:73809800-73847200	Weak transcription	HepG2	liver
21	chr11:73811200-73818200	Strong transcription	Brain Germinal Matrix	brain
22	chr11:73812000-73849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:73812400-73819200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:73812800-73820400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:73814600-73823800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr11:73814600-73845400	Weak transcription	Psoas Muscle	Psoas
27	chr11:73814800-73823800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr11:73814800-73824800	Weak transcription	Fetal Brain Male	brain
29	chr11:73815000-73823800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:73815000-73824800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:73815400-73834200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr11:73816200-73822400	Strong transcription	HSMMtube	muscle
33	chr11:73816400-73820400	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:73816800-73840000	Weak transcription	Fetal Intestine Small	intestine
35	chr11:73816800-73845400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:73817000-73823000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:73817200-73823600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:73817200-73846800	Weak transcription	Spleen	Spleen
39	chr11:73817400-73821800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:73817400-73823600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:73817400-73823600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:73817400-73823600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr11:73817400-73823600	Weak transcription	Brain Hippocampus Middle	brain
44	chr11:73817400-73823600	Weak transcription	Fetal Brain Female	brain
45	chr11:73817400-73823600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:73817400-73823800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr11:73817400-73823800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:73817400-73823800	Weak transcription	Ovary	ovary
49	chr11:73817400-73823800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr11:73817400-73823800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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