Variant report

Variant	rs56971970
Chromosome Location	chr11:73770717-73770718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73768579..73770976-chr11:73779014..73780839,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1962481	1.00[AMR][1000 genomes]
rs2129672	1.00[AMR][1000 genomes]
rs2886883	1.00[AMR][1000 genomes]
rs56877251	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73552726	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
2	chr11:73740000-73771000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:73750800-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:73750800-73800400	Weak transcription	HMEC	breast
5	chr11:73751000-73780200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:73753000-73781400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:73753200-73770800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:73753200-73770800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:73753200-73778200	Weak transcription	Pancreas	Pancrea
10	chr11:73753200-73781600	Weak transcription	Fetal Kidney	kidney
11	chr11:73753200-73782000	Weak transcription	Fetal Brain Male	brain
12	chr11:73753200-73783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:73753200-73783400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:73753200-73796400	Weak transcription	Small Intestine	intestine
15	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
16	chr11:73753400-73781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:73753400-73784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:73758200-73771000	Strong transcription	Primary T cells from cord blood	blood
19	chr11:73758400-73782800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:73758800-73779400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:73759000-73783400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:73759200-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:73759400-73780600	Weak transcription	Brain Germinal Matrix	brain
24	chr11:73759400-73781400	Weak transcription	Spleen	Spleen
25	chr11:73759400-73783600	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:73760000-73780200	Weak transcription	Fetal Intestine Large	intestine
27	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:73760200-73780600	Weak transcription	Hela-S3	cervix
29	chr11:73760600-73783200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:73760600-73785200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:73760800-73779400	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:73760800-73780600	Weak transcription	Right Ventricle	heart
33	chr11:73760800-73781200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:73760800-73782000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:73761000-73771000	Weak transcription	Esophagus	oesophagus
36	chr11:73761000-73771000	Weak transcription	Lung	lung
37	chr11:73761000-73779200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:73761000-73779400	Weak transcription	Gastric	stomach
39	chr11:73761000-73781600	Weak transcription	Brain Anterior Caudate	brain
40	chr11:73762000-73780400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:73763600-73772800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:73764000-73781400	Weak transcription	Brain Angular Gyrus	brain
43	chr11:73765000-73778800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr11:73765000-73779400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:73765000-73780000	Weak transcription	Adipose Nuclei	Adipose
46	chr11:73765000-73781400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:73765000-73781800	Weak transcription	Brain Substantia Nigra	brain
48	chr11:73765400-73778800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:73765400-73784000	Weak transcription	Fetal Intestine Small	intestine
50	chr11:73765600-73781600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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