Variant report

Variant	rs1963844
Chromosome Location	chr7:137456003-137456004
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10261368	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13221354	0.81[ASN][1000 genomes]
rs13235694	0.81[ASN][1000 genomes]
rs2009990	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2113426	0.80[ASN][1000 genomes]
rs3778811	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3800661	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57370627	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73152535	0.83[EUR][1000 genomes]
rs7797147	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1794849	chr7:137453147-137456707	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
3	nsv511992	chr7:137453319-137457163	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
4	esv3338015	chr7:137454237-137456785	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	esv3412977	chr7:137454562-137456635	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137441000-137464400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137442600-137456200	Weak transcription	HSMM	muscle
3	chr7:137451800-137456200	Weak transcription	Osteobl	bone
4	chr7:137453400-137456400	Weak transcription	Brain Anterior Caudate	brain
5	chr7:137453400-137459000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:137453600-137456400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:137453600-137456600	Weak transcription	NHLF	lung
8	chr7:137453600-137457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:137453600-137457600	Weak transcription	Brain Angular Gyrus	brain
10	chr7:137453800-137456200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:137453800-137457000	Weak transcription	HMEC	breast
12	chr7:137453800-137457400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:137454000-137456400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:137454000-137456400	Weak transcription	NHEK	skin
15	chr7:137454000-137456600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:137454000-137457600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:137454000-137457600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:137454000-137459200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:137454000-137459200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:137454000-137459200	Weak transcription	Aorta	Aorta
21	chr7:137454000-137459400	Weak transcription	Esophagus	oesophagus
22	chr7:137455800-137456600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr7:137455800-137457400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:137455800-137458200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr7:137455800-137460400	Enhancers	NHDF-Ad	bronchial
26	chr7:137455800-137461000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:137456000-137456600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:137456000-137456600	Enhancers	NH-A	brain
29	chr7:137456000-137456800	Enhancers	Adipose Nuclei	Adipose
30	chr7:137456000-137458600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:137456000-137459600	Enhancers	HSMMtube	muscle

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