Variant report

Variant	rs57370627
Chromosome Location	chr7:137444018-137444019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137431068..137433961-chr7:137443285..137445463,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10261368	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13221354	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13235694	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1963844	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2009990	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2113426	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351856	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3778811	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3800654	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800661	0.83[EUR][1000 genomes]
rs73152535	0.96[EUR][1000 genomes]
rs7797147	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137439400-137444400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:137439400-137444600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:137439600-137444600	Weak transcription	Brain Germinal Matrix	brain
4	chr7:137439600-137445200	Weak transcription	Brain Anterior Caudate	brain
5	chr7:137440200-137444600	Weak transcription	Fetal Brain Female	brain
6	chr7:137440600-137444600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:137440600-137453200	Weak transcription	Aorta	Aorta
8	chr7:137441000-137444600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:137441000-137464400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:137441200-137444600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:137441200-137444600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:137441600-137445200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:137441800-137444600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:137442200-137453200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:137442400-137444200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:137442400-137444400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:137442400-137451000	Weak transcription	HSMMtube	muscle
18	chr7:137442400-137453000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:137442400-137453200	Weak transcription	NH-A	brain
20	chr7:137442600-137445200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:137442600-137445200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:137442600-137445400	Weak transcription	Osteobl	bone
23	chr7:137442600-137456200	Weak transcription	HSMM	muscle
24	chr7:137442800-137445600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:137443800-137445600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr7:137444000-137444400	Weak transcription	Fetal Brain Male	brain
27	chr7:137444000-137445600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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