Variant report

Variant	rs1964571
Chromosome Location	chr6:149254736-149254737
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1038348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12175861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17080004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17080185	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17080323	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3734374	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6917705	0.95[ASN][1000 genomes]
rs6941568	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9373582	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9377180	0.95[ASN][1000 genomes]
rs9390635	0.98[ASN][1000 genomes]
rs9390636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9390637	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9390638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9390641	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9390642	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9390643	0.94[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs9399676	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9399677	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9404006	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9404008	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:149226600-149255600	Weak transcription	Ovary	ovary
3	chr6:149240600-149256400	Weak transcription	Aorta	Aorta
4	chr6:149243600-149262600	Weak transcription	Primary B cells from cord blood	blood
5	chr6:149246000-149255600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:149246000-149262600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:149246800-149262400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:149247200-149258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:149247200-149259000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:149247800-149268800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:149248400-149255400	Weak transcription	Fetal Heart	heart
12	chr6:149252400-149254800	Weak transcription	Fetal Brain Male	brain
13	chr6:149252800-149257600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:149253000-149255400	Weak transcription	Fetal Lung	lung
15	chr6:149253400-149254800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:149253400-149255400	Weak transcription	Fetal Stomach	stomach
17	chr6:149253600-149256800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:149253800-149255000	Enhancers	HSMM	muscle
19	chr6:149253800-149257600	Enhancers	HSMMtube	muscle
20	chr6:149253800-149262600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:149254000-149256800	Enhancers	NHEK	skin
22	chr6:149254200-149256000	Weak transcription	NH-A	brain
23	chr6:149254400-149256000	Enhancers	HMEC	breast
24	chr6:149254600-149254800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:149254600-149254800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:149254600-149254800	Enhancers	Psoas Muscle	Psoas
27	chr6:149254600-149255000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:149254600-149255000	Enhancers	Fetal Thymus	thymus
29	chr6:149254600-149256000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:149254600-149256200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:149254600-149257600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:149254600-149257600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:149254600-149257600	Enhancers	Fetal Muscle Leg	muscle
34	chr6:149254600-149257600	Enhancers	NHDF-Ad	bronchial

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