Variant report

Variant	rs9404006
Chromosome Location	chr6:149244347-149244348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1038348	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12175861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17080004	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080185	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17080323	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1964571	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3734374	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6902673	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6917705	0.97[ASN][1000 genomes]
rs6941568	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9373582	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9377180	0.97[ASN][1000 genomes]
rs9390635	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9390636	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390638	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390641	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9390642	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390643	0.94[CHD][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9399676	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399677	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9404008	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149209000-149247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:149226600-149252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:149226600-149255600	Weak transcription	Ovary	ovary
5	chr6:149230800-149244600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:149231000-149245400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:149234200-149244600	Weak transcription	Fetal Heart	heart
8	chr6:149234200-149245800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:149234400-149245000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:149235400-149253000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:149235800-149245400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:149237000-149244600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:149237400-149244400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:149237600-149245000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:149238000-149244800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:149238200-149245400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:149238400-149252600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:149238800-149245200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:149239400-149244600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:149239600-149245600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:149240600-149245200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:149240600-149245600	Weak transcription	Fetal Stomach	stomach
23	chr6:149240600-149247000	Weak transcription	Pancreas	Pancrea
24	chr6:149240600-149247200	Weak transcription	Dnd41	blood
25	chr6:149240600-149254600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:149240600-149256400	Weak transcription	Aorta	Aorta
27	chr6:149243000-149245400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:149243600-149262600	Weak transcription	Primary B cells from cord blood	blood
29	chr6:149244200-149246800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr6:149244200-149247800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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