Variant report

Variant	rs1964621
Chromosome Location	chr9:71113484-71113485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10868944	0.94[ASN][1000 genomes]
rs1964620	0.84[EUR][1000 genomes]
rs265080	0.93[ASN][1000 genomes]
rs36011409	0.80[ASN][1000 genomes]
rs7039076	0.94[ASN][1000 genomes]
rs923784	0.94[ASN][1000 genomes]
rs923785	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71092200-71115400	Weak transcription	Psoas Muscle	Psoas
2	chr9:71101800-71113600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:71102200-71121000	Weak transcription	Fetal Kidney	kidney
4	chr9:71103600-71122000	Weak transcription	Ovary	ovary
5	chr9:71103800-71114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:71104400-71114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:71109000-71114000	Weak transcription	Right Ventricle	heart
8	chr9:71109400-71113800	Weak transcription	Fetal Lung	lung
9	chr9:71109400-71114600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:71109400-71114800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:71109400-71120600	Weak transcription	Adipose Nuclei	Adipose
12	chr9:71109600-71113600	Weak transcription	Fetal Stomach	stomach
13	chr9:71109600-71114400	Weak transcription	NHLF	lung
14	chr9:71109600-71115200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:71109800-71114200	Weak transcription	Aorta	Aorta
16	chr9:71109800-71115200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:71110000-71120600	Weak transcription	Gastric	stomach
18	chr9:71110200-71114800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:71111000-71113600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr9:71111400-71114200	Weak transcription	Left Ventricle	heart
21	chr9:71111400-71114800	Weak transcription	NHDF-Ad	bronchial
22	chr9:71111400-71115200	Weak transcription	Fetal Muscle Leg	muscle
23	chr9:71111400-71115800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:71111600-71114600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr9:71111600-71115400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:71112000-71115200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr9:71112400-71113800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:71112400-71114000	Enhancers	HSMMtube	muscle
29	chr9:71112400-71114600	Weak transcription	Fetal Heart	heart
30	chr9:71112600-71114200	Strong transcription	Colon Smooth Muscle	Colon
31	chr9:71113000-71114200	Weak transcription	Right Atrium	heart
32	chr9:71113200-71120600	Weak transcription	Fetal Intestine Large	intestine

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