Variant report

Variant	rs923784
Chromosome Location	chr9:71117279-71117280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71103333..71104874-chr9:71115669..71118300,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10868944	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12685375	0.82[JPT][hapmap]
rs1964621	0.94[ASN][1000 genomes]
rs265080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36011409	0.85[ASN][1000 genomes]
rs7039076	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7874438	0.82[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.90[MKK][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs923785	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71102200-71121000	Weak transcription	Fetal Kidney	kidney
2	chr9:71103600-71122000	Weak transcription	Ovary	ovary
3	chr9:71109400-71120600	Weak transcription	Adipose Nuclei	Adipose
4	chr9:71110000-71120600	Weak transcription	Gastric	stomach
5	chr9:71113200-71120600	Weak transcription	Fetal Intestine Large	intestine
6	chr9:71113600-71120200	Strong transcription	Fetal Stomach	stomach
7	chr9:71114600-71117600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr9:71114800-71117400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:71114800-71117600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:71115000-71117600	Genic enhancers	Stomach Smooth Muscle	stomach
11	chr9:71115200-71117600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:71115200-71120200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:71115400-71117600	Enhancers	Fetal Heart	heart
14	chr9:71115600-71121400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:71115800-71117800	Enhancers	Fetal Muscle Leg	muscle
16	chr9:71116000-71117400	Weak transcription	Fetal Lung	lung
17	chr9:71116000-71117600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:71116000-71120400	Weak transcription	Aorta	Aorta
19	chr9:71116000-71120600	Weak transcription	Liver	Liver
20	chr9:71116200-71117800	Enhancers	Left Ventricle	heart
21	chr9:71116200-71119200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:71116200-71120400	Weak transcription	Psoas Muscle	Psoas
23	chr9:71116200-71124000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr9:71116400-71122000	Weak transcription	HSMMtube	muscle
25	chr9:71116600-71117600	Enhancers	Hela-S3	cervix
26	chr9:71116600-71122000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:71116800-71117400	Weak transcription	Colon Smooth Muscle	Colon
28	chr9:71116800-71120200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr9:71116800-71120800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:71116800-71122000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:71117000-71117600	Enhancers	Right Ventricle	heart
32	chr9:71117000-71129600	Weak transcription	NHLF	lung
33	chr9:71117200-71117400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
34	chr9:71117200-71117800	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links