Variant report

Variant	rs7874438
Chromosome Location	chr9:71114809-71114810
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10868944	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12685375	0.91[YRI][hapmap]
rs265080	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7039076	1.00[ASW][hapmap];0.89[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs923784	0.82[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.90[MKK][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs923785	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7874438	PRRX1	trans	lymphoblastoid	seeQTL
rs7874438	MGST2	trans	lymphoblastoid	seeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71092200-71115400	Weak transcription	Psoas Muscle	Psoas
2	chr9:71102200-71121000	Weak transcription	Fetal Kidney	kidney
3	chr9:71103600-71122000	Weak transcription	Ovary	ovary
4	chr9:71109400-71120600	Weak transcription	Adipose Nuclei	Adipose
5	chr9:71109600-71115200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:71109800-71115200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:71110000-71120600	Weak transcription	Gastric	stomach
8	chr9:71111400-71115200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:71111400-71115800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:71111600-71115400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:71112000-71115200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:71113200-71120600	Weak transcription	Fetal Intestine Large	intestine
13	chr9:71113600-71115000	Strong transcription	Stomach Smooth Muscle	stomach
14	chr9:71113600-71116200	Strong transcription	Fetal Muscle Trunk	muscle
15	chr9:71113600-71120200	Strong transcription	Fetal Stomach	stomach
16	chr9:71113800-71115200	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:71113800-71116000	Strong transcription	Fetal Lung	lung
18	chr9:71114000-71116200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:71114200-71115400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:71114200-71116000	Enhancers	Aorta	Aorta
21	chr9:71114200-71116200	Genic enhancers	Left Ventricle	heart
22	chr9:71114200-71116800	Genic enhancers	Colon Smooth Muscle	Colon
23	chr9:71114200-71116800	Enhancers	Right Atrium	heart
24	chr9:71114400-71115400	Weak transcription	Lung	lung
25	chr9:71114400-71116000	Weak transcription	Right Ventricle	heart
26	chr9:71114400-71117000	Enhancers	NHLF	lung
27	chr9:71114600-71115000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:71114600-71115200	Genic enhancers	Fetal Heart	heart
29	chr9:71114600-71115400	Enhancers	Hela-S3	cervix
30	chr9:71114600-71116600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:71114600-71117600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr9:71114800-71116400	Enhancers	HSMMtube	muscle
33	chr9:71114800-71116600	Enhancers	NHDF-Ad	bronchial
34	chr9:71114800-71116800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:71114800-71117400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:71114800-71117600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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