Variant report

Variant	rs1964834
Chromosome Location	chr6:15109363-15109364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6937403	1.00[AMR][1000 genomes]
rs73724738	0.94[EUR][1000 genomes]
rs9464746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15108400-15110600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:15108600-15110000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:15108800-15109400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:15108800-15109400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:15109000-15109400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:15109000-15109400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:15109000-15109400	Enhancers	Fetal Lung	lung
9	chr6:15109000-15109400	Enhancers	Pancreas	Pancrea
10	chr6:15109000-15109600	Enhancers	Primary B cells from cord blood	blood
11	chr6:15109000-15109600	Enhancers	Fetal Intestine Large	intestine
12	chr6:15109000-15110000	Enhancers	Fetal Brain Male	brain
13	chr6:15109000-15110400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:15109200-15109600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr6:15109200-15111000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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