Variant report

Variant	rs1964841
Chromosome Location	chr14:39565602-39565603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39564253..39566731-chr14:39570082..39573549,3	MCF-7	breast:
2	chr14:39565337..39567780-chr14:39737837..39739519,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100934	Chromatin interaction
ENSG00000258651	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10459481	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10872915	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11558739	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11620885	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11620889	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11622021	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11628065	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184985	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12432236	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12433305	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12435383	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12436766	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17678595	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17678780	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2273316	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2415534	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34417819	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35802696	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57049071	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57120608	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61999361	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61999428	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61999432	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61999433	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61999434	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61999436	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61999439	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61999443	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61999444	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61999445	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62000580	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7158043	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72673310	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs761808	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322995	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9788627	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39526800-39566600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:39528600-39566400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:39529200-39566600	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:39529800-39566400	Weak transcription	Fetal Heart	heart
5	chr14:39531200-39569200	Weak transcription	Stomach Mucosa	stomach
6	chr14:39534200-39566600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr14:39534600-39566800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:39538600-39566400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:39539000-39566600	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr14:39554200-39571200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:39554800-39571600	Weak transcription	K562	blood
12	chr14:39555200-39571600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:39555800-39569000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:39556800-39566200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:39556800-39566800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr14:39557200-39566400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:39558400-39566000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:39558600-39566000	Strong transcription	A549	lung
19	chr14:39558800-39571400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:39560200-39566000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:39560200-39566400	Weak transcription	Small Intestine	intestine
22	chr14:39560200-39569400	Weak transcription	Spleen	Spleen
23	chr14:39560200-39569800	Weak transcription	Pancreas	Pancrea
24	chr14:39560200-39571000	Weak transcription	Aorta	Aorta
25	chr14:39560400-39571400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr14:39560400-39571600	Weak transcription	Esophagus	oesophagus
27	chr14:39560400-39571600	Weak transcription	Gastric	stomach
28	chr14:39561000-39565800	Strong transcription	Fetal Intestine Large	intestine
29	chr14:39561000-39566400	Weak transcription	Right Ventricle	heart
30	chr14:39561000-39570600	Weak transcription	Lung	lung
31	chr14:39561000-39571200	Weak transcription	Colonic Mucosa	Colon
32	chr14:39561000-39571400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:39561000-39571400	Weak transcription	Psoas Muscle	Psoas
34	chr14:39561400-39566200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr14:39561400-39569200	Weak transcription	Fetal Brain Male	brain
36	chr14:39561600-39565800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr14:39561600-39566200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:39561600-39569000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr14:39561600-39571200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:39561600-39571400	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:39561600-39571600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr14:39562000-39566000	Strong transcription	Fetal Intestine Small	intestine
43	chr14:39562800-39567200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr14:39563400-39567200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:39563400-39571600	Weak transcription	Thymus	Thymus
46	chr14:39563800-39566200	Genic enhancers	HepG2	liver
47	chr14:39564000-39571200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:39564200-39568800	Weak transcription	Hela-S3	cervix
49	chr14:39564400-39566200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr14:39564400-39566200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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