Variant report

Variant	rs7158043
Chromosome Location	chr14:39535189-39535190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10459481	0.83[AMR][1000 genomes]
rs10872915	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11558739	0.83[AMR][1000 genomes]
rs11620885	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11620889	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11622021	0.83[AMR][1000 genomes]
rs11628065	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12184985	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12432236	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433305	0.83[AMR][1000 genomes]
rs12435383	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12436766	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17616116	0.80[EUR][1000 genomes]
rs17678595	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17678780	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964841	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2273316	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2415534	0.83[AMR][1000 genomes]
rs34417819	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35802696	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57049071	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57120608	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61999361	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61999428	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61999432	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61999433	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61999434	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61999436	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61999443	0.83[AMR][1000 genomes]
rs61999444	0.83[AMR][1000 genomes]
rs61999445	0.83[AMR][1000 genomes]
rs62000580	0.83[AMR][1000 genomes]
rs7157388	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72673310	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs761808	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322995	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv564417	chr14:39452317-39535560	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39521200-39535600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:39523800-39540200	Weak transcription	Psoas Muscle	Psoas
3	chr14:39525400-39540600	Strong transcription	NH-A	brain
4	chr14:39525600-39540600	Strong transcription	HSMM	muscle
5	chr14:39525600-39541000	Weak transcription	Brain Angular Gyrus	brain
6	chr14:39525600-39565600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:39526000-39537400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:39526000-39557200	Strong transcription	Osteobl	bone
9	chr14:39526200-39535200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:39526400-39563200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:39526800-39535400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:39526800-39535400	Strong transcription	NHDF-Ad	bronchial
13	chr14:39526800-39537200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:39526800-39538400	Strong transcription	Liver	Liver
15	chr14:39526800-39540400	Weak transcription	Spleen	Spleen
16	chr14:39526800-39540800	Weak transcription	Right Ventricle	heart
17	chr14:39526800-39541200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:39526800-39552600	Weak transcription	Gastric	stomach
19	chr14:39526800-39553800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr14:39526800-39554000	Weak transcription	Aorta	Aorta
21	chr14:39526800-39554000	Weak transcription	Esophagus	oesophagus
22	chr14:39526800-39554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:39526800-39554200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:39526800-39566600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:39527000-39536600	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr14:39527000-39537200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:39527000-39537200	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr14:39527000-39539000	Weak transcription	Lung	lung
29	chr14:39527000-39540600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:39527000-39540600	Weak transcription	Thymus	Thymus
31	chr14:39527000-39541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr14:39527000-39554200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:39527000-39565400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:39527400-39536000	Strong transcription	Fetal Lung	lung
35	chr14:39527400-39536400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:39527400-39536600	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr14:39527400-39536600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr14:39527400-39537200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:39527400-39538200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr14:39527400-39538400	Strong transcription	HepG2	liver
41	chr14:39527400-39549000	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:39527600-39554200	Weak transcription	K562	blood
43	chr14:39528000-39536600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:39528000-39547800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr14:39528000-39565400	Strong transcription	Placenta	Placenta
46	chr14:39528000-39565600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr14:39528200-39536600	Strong transcription	Adipose Nuclei	Adipose
48	chr14:39528200-39537800	Strong transcription	Fetal Intestine Large	intestine
49	chr14:39528200-39545800	Strong transcription	Dnd41	blood
50	chr14:39528200-39548800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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