Variant report

Variant	rs1965462
Chromosome Location	chr2:212464224-212464225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1009142	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10204337	0.88[EUR][1000 genomes]
rs10210942	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10804199	0.88[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs10932386	0.86[ASN][1000 genomes]
rs10932388	0.81[EUR][1000 genomes]
rs11679779	0.86[ASN][1000 genomes]
rs11679860	0.86[ASN][1000 genomes]
rs11687988	0.86[ASN][1000 genomes]
rs11691078	0.84[ASN][1000 genomes]
rs11695852	0.90[ASN][1000 genomes]
rs12465773	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12614500	0.86[ASN][1000 genomes]
rs12619171	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs12694243	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs12694245	0.86[ASN][1000 genomes]
rs12694246	0.80[AMR][1000 genomes]
rs13007756	0.86[ASN][1000 genomes]
rs1818751	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs1829610	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1829611	0.88[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1851195	0.80[AMR][1000 genomes]
rs1972142	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs1972143	0.88[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1976834	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2371303	0.84[ASN][1000 genomes]
rs2371304	0.86[ASN][1000 genomes]
rs2371305	0.84[ASN][1000 genomes]
rs2888004	0.85[ASN][1000 genomes]
rs4488593	0.86[ASN][1000 genomes]
rs4599046	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4640322	0.88[ASN][1000 genomes]
rs4672619	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs4673623	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs4673624	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs6721804	0.88[ASN][1000 genomes]
rs6731454	0.83[ASN][1000 genomes]
rs7559734	0.94[AFR][1000 genomes]
rs7561282	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7572669	0.84[ASN][1000 genomes]
rs7595207	0.88[ASN][1000 genomes]
rs7595223	0.88[ASN][1000 genomes]
rs7602185	0.83[EUR][1000 genomes]
rs9288434	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9288435	0.88[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212452400-212466800	Weak transcription	Aorta	Aorta
2	chr2:212456600-212473600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:212462600-212465800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:212462800-212465800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:212463000-212464400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:212463600-212465400	Enhancers	Fetal Heart	heart
7	chr2:212463800-212465000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:212464000-212464800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:212464000-212465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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