Variant report

Variant	rs7559734
Chromosome Location	chr2:212465664-212465665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10203022	0.91[ASN][1000 genomes]
rs10204337	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10932387	0.91[ASN][1000 genomes]
rs10932388	0.92[ASN][1000 genomes]
rs11684753	0.84[ASN][1000 genomes]
rs12694244	0.88[ASN][1000 genomes]
rs1965462	0.94[AFR][1000 genomes]
rs2371307	0.91[AMR][1000 genomes]
rs4539738	0.89[ASN][1000 genomes]
rs6746549	0.91[ASN][1000 genomes]
rs7556879	0.98[ASN][1000 genomes]
rs7585825	0.88[ASN][1000 genomes]
rs7586137	0.91[ASN][1000 genomes]
rs7589006	0.88[ASN][1000 genomes]
rs7602185	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7602757	0.86[ASN][1000 genomes]
rs7602850	0.86[ASN][1000 genomes]
rs939591	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212452400-212466800	Weak transcription	Aorta	Aorta
2	chr2:212456600-212473600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:212462600-212465800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:212462800-212465800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:212465400-212469000	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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