Variant report
| Variant | rs7602757 |
|---|---|
| Chromosome Location | chr2:212448759-212448760 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1009142 | 1.00[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10203022 | 0.89[ASN][1000 genomes] |
| rs10204337 | 0.87[ASN][1000 genomes] |
| rs10932386 | 1.00[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10932387 | 0.86[ASN][1000 genomes] |
| rs10932388 | 0.87[ASN][1000 genomes] |
| rs11679779 | 0.80[EUR][1000 genomes] |
| rs11684753 | 0.98[ASN][1000 genomes] |
| rs12614500 | 0.85[EUR][1000 genomes] |
| rs12694243 | 1.00[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12694244 | 0.98[ASN][1000 genomes] |
| rs12694245 | 0.99[EUR][1000 genomes] |
| rs13007756 | 1.00[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2371303 | 1.00[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4539738 | 0.97[ASN][1000 genomes] |
| rs4672619 | 0.97[EUR][1000 genomes] |
| rs4673623 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4673624 | 0.85[EUR][1000 genomes] |
| rs6721804 | 1.00[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6731454 | 0.85[EUR][1000 genomes] |
| rs6746549 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7556879 | 0.87[ASN][1000 genomes] |
| rs7559734 | 0.86[ASN][1000 genomes] |
| rs7572669 | 0.97[EUR][1000 genomes] |
| rs7585825 | 0.98[ASN][1000 genomes] |
| rs7586137 | 0.95[ASN][1000 genomes] |
| rs7589006 | 0.98[ASN][1000 genomes] |
| rs7602185 | 0.86[ASN][1000 genomes] |
| rs7602850 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs939591 | 0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1000722 | chr2:212272622-212465143 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv460069 | chr2:212415948-212471642 | Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv584320 | chr2:212415948-212471642 | Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv584321 | chr2:212446818-212511895 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212419400-212451800 | Weak transcription | Aorta | Aorta |
| 2 | chr2:212435400-212450000 | Weak transcription | Fetal Heart | heart |
| 3 | chr2:212444400-212451200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
