Variant report

Variant	rs4539738
Chromosome Location	chr2:212453789-212453790
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212443336..212445425-chr2:212453184..212455748,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10198754	0.82[EUR][1000 genomes]
rs10203022	0.92[ASN][1000 genomes]
rs10204337	0.91[ASN][1000 genomes]
rs10932387	0.89[ASN][1000 genomes]
rs10932388	0.91[ASN][1000 genomes]
rs11679779	0.95[EUR][1000 genomes]
rs11679860	0.93[EUR][1000 genomes]
rs11684753	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11687988	0.84[EUR][1000 genomes]
rs11691078	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11695852	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12614500	0.85[EUR][1000 genomes]
rs12619171	0.94[EUR][1000 genomes]
rs12694244	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1818751	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1829610	0.81[AFR][1000 genomes]
rs1976833	0.82[AFR][1000 genomes]
rs1976834	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2371304	0.92[EUR][1000 genomes]
rs2371305	0.91[EUR][1000 genomes]
rs2888004	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4488593	0.88[EUR][1000 genomes]
rs4599046	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4640322	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4673624	0.88[EUR][1000 genomes]
rs6746549	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7556879	0.91[ASN][1000 genomes]
rs7559734	0.89[ASN][1000 genomes]
rs7561282	0.99[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7585825	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7586137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7589006	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7595207	0.94[EUR][1000 genomes]
rs7595223	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7602185	0.89[ASN][1000 genomes]
rs7602757	0.97[ASN][1000 genomes]
rs7602850	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs939591	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212451200-212456200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212452400-212466800	Weak transcription	Aorta	Aorta

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