Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1009142	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10203022	0.91[ASN][1000 genomes]
rs10204337	0.92[ASN][1000 genomes]
rs10932386	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10932387	0.91[ASN][1000 genomes]
rs10932388	0.92[ASN][1000 genomes]
rs11684753	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12614500	0.80[EUR][1000 genomes]
rs12694243	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12694244	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12694245	0.93[EUR][1000 genomes]
rs13007756	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2371303	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4539738	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4672619	0.92[EUR][1000 genomes]
rs4673623	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4673624	0.80[EUR][1000 genomes]
rs6721804	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6731454	0.80[EUR][1000 genomes]
rs7556879	0.92[ASN][1000 genomes]
rs7559734	0.91[ASN][1000 genomes]
rs7572669	0.92[EUR][1000 genomes]
rs7585825	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7586137	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7589006	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7602185	0.88[ASN][1000 genomes]
rs7602757	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7602850	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs939591	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212451200-212456200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212452400-212466800	Weak transcription	Aorta	Aorta
3	chr2:212455200-212456400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: