Variant report

Variant	rs1968453
Chromosome Location	chr19:41784047-41784048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41783745..41786202-chr19:41801580..41803977,3	MCF-7	breast:
2	chr19:41768535..41773043-chr19:41782626..41787574,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105323	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1051008	1.00[ASN][1000 genomes]
rs11466349	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16959007	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16975124	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16975156	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16975164	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2217656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2288875	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3810173	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3826715	0.82[ASN][1000 genomes]
rs61247776	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs747857	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9304592	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998468	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv17637	chr19:41770228-41815282	Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41772800-41794400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
2	chr19:41773000-41802400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:41773000-41804000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr19:41773200-41794400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr19:41773200-41794600	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr19:41773200-41802200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr19:41773200-41814400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:41773400-41788000	Strong transcription	Brain Cingulate Gyrus	brain
9	chr19:41773400-41788400	Strong transcription	Primary hematopoietic stem cells	blood
10	chr19:41773400-41788600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
11	chr19:41773400-41792600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
12	chr19:41773400-41793200	Strong transcription	Brain Anterior Caudate	brain
13	chr19:41773400-41794400	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr19:41773400-41794600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr19:41773400-41802200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr19:41773400-41802200	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr19:41773600-41788000	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr19:41773600-41788400	Strong transcription	Esophagus	oesophagus
19	chr19:41773600-41792600	Strong transcription	Rectal Smooth Muscle	rectum
20	chr19:41773600-41792800	Strong transcription	Colonic Mucosa	Colon
21	chr19:41773600-41793400	Strong transcription	K562	blood
22	chr19:41773600-41793400	Strong transcription	NH-A	brain
23	chr19:41773600-41793600	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr19:41773600-41801400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr19:41773600-41801800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr19:41773600-41802200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr19:41773600-41802200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr19:41773600-41802200	Strong transcription	Placenta	Placenta
29	chr19:41773600-41802200	Strong transcription	HSMM	muscle
30	chr19:41773600-41802800	Weak transcription	Right Atrium	heart
31	chr19:41773600-41803400	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr19:41773600-41804400	Strong transcription	Thymus	Thymus
33	chr19:41773600-41812600	Strong transcription	A549	lung
34	chr19:41773800-41787800	Strong transcription	Fetal Lung	lung
35	chr19:41773800-41788000	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr19:41773800-41788000	Strong transcription	Brain Angular Gyrus	brain
37	chr19:41773800-41788000	Strong transcription	Brain Hippocampus Middle	brain
38	chr19:41773800-41788600	Strong transcription	NHDF-Ad	bronchial
39	chr19:41773800-41790800	Strong transcription	HepG2	liver
40	chr19:41773800-41793800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr19:41773800-41794600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr19:41773800-41798400	Strong transcription	Adipose Nuclei	Adipose
43	chr19:41773800-41800200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr19:41773800-41800200	Strong transcription	Fetal Intestine Large	intestine
45	chr19:41773800-41800200	Strong transcription	Fetal Intestine Small	intestine
46	chr19:41773800-41801400	Strong transcription	HMEC	breast
47	chr19:41773800-41801600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr19:41773800-41801600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr19:41773800-41801600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr19:41773800-41802000	Strong transcription	Rectal Mucosa Donor 29	rectum

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