Variant report

Variant	rs61247776
Chromosome Location	chr19:41831654-41831655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:41831560..41835425-chr19:41857306..41860915,5	MCF-7	breast:
2	chr19:41828482..41836150-chr19:41836490..41842395,12	K562	blood:
3	chr19:41811198..41813629-chr19:41830281..41833026,2	K562	blood:
4	chr19:41830987..41833840-chr19:41863132..41865918,2	MCF-7	breast:
5	chr19:41831305..41834013-chr19:41846583..41848219,2	MCF-7	breast:
6	chr19:41710873..41712522-chr19:41830997..41833166,2	K562	blood:
7	chr19:41771700..41774253-chr19:41830913..41833263,2	K562	blood:
8	chr19:41831346..41834829-chr19:41839847..41842634,3	MCF-7	breast:
9	chr19:41831307..41833980-chr19:41944294..41947067,2	MCF-7	breast:
10	chr19:41827333..41835079-chr19:41855373..41860241,10	K562	blood:
11	chr19:41825452..41832651-chr19:41855170..41863054,16	K562	blood:
12	chr19:41831464..41833596-chr19:41945378..41947616,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000105323	Chromatin interaction
ENSG00000142046	Chromatin interaction
ENSG00000255730	Chromatin interaction
ENSG00000105341	Chromatin interaction
ENSG00000105329	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1051008	0.89[ASN][1000 genomes]
rs11466349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16959007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16975124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16975156	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16975164	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1968453	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2217656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288875	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3810173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747857	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9304592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs998468	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911769	chr19:41813676-41845801	Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41818600-41854800	Strong transcription	Dnd41	blood
2	chr19:41823200-41832000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr19:41823400-41832200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr19:41824400-41834000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr19:41827000-41832800	Genic enhancers	Primary T cells fromperipheralblood	blood
6	chr19:41827200-41832000	Enhancers	NHDF-Ad	bronchial
7	chr19:41827400-41833000	Enhancers	Primary hematopoietic stem cells	blood
8	chr19:41827400-41833000	Genic enhancers	Fetal Thymus	thymus
9	chr19:41827600-41831800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
10	chr19:41827800-41832200	Enhancers	Stomach Mucosa	stomach
11	chr19:41828000-41832000	Enhancers	Duodenum Mucosa	Duodenum
12	chr19:41828400-41832200	Enhancers	Liver	Liver
13	chr19:41828600-41832200	Enhancers	Primary B cells from cord blood	blood
14	chr19:41828600-41834000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr19:41828800-41832400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr19:41828800-41834000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:41828800-41834400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:41829200-41832200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr19:41829200-41835400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr19:41829400-41832000	Enhancers	HSMMtube	muscle
21	chr19:41829600-41831800	Enhancers	Gastric	stomach
22	chr19:41829600-41832200	Weak transcription	Hela-S3	cervix
23	chr19:41829600-41833000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr19:41829800-41832000	Enhancers	Esophagus	oesophagus
25	chr19:41829800-41832200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:41830000-41831800	Enhancers	Colonic Mucosa	Colon
27	chr19:41830000-41831800	Enhancers	Lung	lung
28	chr19:41830000-41832000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:41830000-41832000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr19:41830000-41832000	Enhancers	Placenta	Placenta
31	chr19:41830000-41832200	Enhancers	GM12878-XiMat	blood
32	chr19:41830000-41832600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr19:41830000-41833000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr19:41830000-41833400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:41830200-41832400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr19:41830200-41833200	Enhancers	HMEC	breast
37	chr19:41830400-41832000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr19:41830400-41832400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr19:41830400-41832400	Weak transcription	NHEK	skin
40	chr19:41830400-41834000	Enhancers	Fetal Lung	lung
41	chr19:41830600-41831800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr19:41830600-41831800	Flanking Active TSS	A549	lung
43	chr19:41830600-41832000	Enhancers	Primary B cells from peripheral blood	blood
44	chr19:41830600-41832400	Flanking Active TSS	NH-A	brain
45	chr19:41830600-41832600	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr19:41830600-41833000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr19:41830800-41831800	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr19:41830800-41831800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr19:41830800-41831800	Enhancers	Spleen	Spleen
50	chr19:41830800-41832000	Active TSS	ES-I3 Cell Line	embryonic stem cell

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