Variant report

Variant	rs1968497
Chromosome Location	chr15:34340529-34340530
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1529951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28453263	0.95[EUR][1000 genomes]
rs499167	0.96[ASN][1000 genomes]
rs534155	0.98[ASN][1000 genomes]
rs539584	0.98[ASN][1000 genomes]
rs554303	0.96[ASN][1000 genomes]
rs562486	0.98[ASN][1000 genomes]
rs564262	0.98[ASN][1000 genomes]
rs579975	0.96[ASN][1000 genomes]
rs587714	0.98[ASN][1000 genomes]
rs59502570	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60757549	0.81[ASN][1000 genomes]
rs668922	0.96[ASN][1000 genomes]
rs7494836	0.81[ASN][1000 genomes]
rs8029344	0.96[ASN][1000 genomes]
rs8035849	0.96[ASN][1000 genomes]
rs9707955	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34337600-34341800	Enhancers	Osteobl	bone
2	chr15:34338800-34341800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:34339000-34341200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:34339000-34341200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr15:34339400-34341400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:34339600-34341800	Enhancers	HMEC	breast
7	chr15:34339800-34340600	Bivalent Enhancer	HepG2	liver
8	chr15:34339800-34340600	Enhancers	NHDF-Ad	bronchial
9	chr15:34340000-34341200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:34340000-34341200	Flanking Active TSS	HSMM	muscle
11	chr15:34340000-34341400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:34340000-34341400	Flanking Active TSS	HSMMtube	muscle
13	chr15:34340000-34341800	Flanking Active TSS	NH-A	brain
14	chr15:34340000-34342000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:34340200-34341400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:34340400-34340600	Flanking Active TSS	Placenta	Placenta
17	chr15:34340400-34342000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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