Variant report

Variant	rs59502570
Chromosome Location	chr15:34339508-34339509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34334263..34336423-chr15:34338264..34339840,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12438470	0.81[ASN][1000 genomes]
rs1529951	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16958595	0.86[ASN][1000 genomes]
rs1968497	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28453263	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34196590	0.81[ASN][1000 genomes]
rs3764238	0.81[ASN][1000 genomes]
rs499167	0.80[ASN][1000 genomes]
rs534155	0.82[ASN][1000 genomes]
rs539584	0.82[ASN][1000 genomes]
rs554303	0.80[ASN][1000 genomes]
rs562486	0.82[ASN][1000 genomes]
rs564262	0.82[ASN][1000 genomes]
rs56743146	0.88[ASN][1000 genomes]
rs57987098	0.89[ASN][1000 genomes]
rs579975	0.80[ASN][1000 genomes]
rs587714	0.82[ASN][1000 genomes]
rs58866635	0.86[ASN][1000 genomes]
rs60757549	0.97[ASN][1000 genomes]
rs60880416	0.88[ASN][1000 genomes]
rs61153924	0.88[ASN][1000 genomes]
rs61196776	0.84[ASN][1000 genomes]
rs668922	0.80[ASN][1000 genomes]
rs7494836	0.97[ASN][1000 genomes]
rs8029344	0.80[ASN][1000 genomes]
rs8035849	0.80[ASN][1000 genomes]
rs9707955	0.80[ASN][1000 genomes]
rs9972453	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34336400-34340400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:34337400-34340000	Enhancers	HSMM	muscle
3	chr15:34337400-34340000	Enhancers	HSMMtube	muscle
4	chr15:34337600-34341800	Enhancers	Osteobl	bone
5	chr15:34338400-34340000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:34338400-34340000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:34338800-34341800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:34339000-34340000	Enhancers	NH-A	brain
9	chr15:34339000-34340400	Enhancers	K562	blood
10	chr15:34339000-34341200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:34339000-34341200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:34339200-34339600	Active TSS	Placenta	Placenta
13	chr15:34339400-34341400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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