Variant report

Variant	rs9972453
Chromosome Location	chr15:34383649-34383650
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10152308	0.84[ASN][1000 genomes]
rs10152504	0.84[ASN][1000 genomes]
rs10851938	0.83[ASN][1000 genomes]
rs12438470	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12441615	0.84[ASN][1000 genomes]
rs12898455	0.84[ASN][1000 genomes]
rs16958780	0.83[ASN][1000 genomes]
rs2339373	0.84[ASN][1000 genomes]
rs28453263	0.87[ASN][1000 genomes]
rs34196590	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3764237	0.84[ASN][1000 genomes]
rs3764238	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59502570	0.81[ASN][1000 genomes]
rs60270549	0.84[ASN][1000 genomes]
rs62014675	0.84[ASN][1000 genomes]
rs62014728	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62014729	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7178266	0.84[ASN][1000 genomes]
rs8033335	0.83[ASN][1000 genomes]
rs8037065	0.84[ASN][1000 genomes]
rs8182015	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34358600-34393000	Weak transcription	Aorta	Aorta
2	chr15:34368000-34391600	Weak transcription	Right Ventricle	heart
3	chr15:34368800-34392400	Weak transcription	Psoas Muscle	Psoas
4	chr15:34369600-34391600	Weak transcription	NHEK	skin
5	chr15:34372800-34393200	Weak transcription	Colonic Mucosa	Colon
6	chr15:34373600-34392400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:34374200-34383800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:34374200-34392800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:34374400-34391600	Weak transcription	Fetal Brain Male	brain
10	chr15:34374800-34384200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:34374800-34385600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:34374800-34391600	Weak transcription	Small Intestine	intestine
13	chr15:34374800-34393000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:34375000-34386800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:34375000-34392800	Weak transcription	Fetal Heart	heart
16	chr15:34375000-34393000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:34375400-34388800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:34375400-34388800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:34375600-34389000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr15:34375800-34391600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:34376000-34390200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:34376000-34392800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:34376800-34386800	Weak transcription	Fetal Lung	lung
24	chr15:34376800-34392400	Weak transcription	Brain Substantia Nigra	brain
25	chr15:34378400-34386600	Weak transcription	HUVEC	blood vessel
26	chr15:34378400-34392400	Weak transcription	NHLF	lung
27	chr15:34378600-34386400	Weak transcription	Brain Germinal Matrix	brain
28	chr15:34378600-34386800	Weak transcription	NHDF-Ad	bronchial
29	chr15:34378600-34392200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:34378600-34392600	Weak transcription	Fetal Kidney	kidney
31	chr15:34378800-34393000	Weak transcription	Lung	lung
32	chr15:34379000-34385400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:34379000-34393000	Weak transcription	Esophagus	oesophagus
34	chr15:34379400-34383800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:34379600-34385800	Weak transcription	Stomach Mucosa	stomach
36	chr15:34379800-34386600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:34380200-34386600	Weak transcription	Brain Anterior Caudate	brain
38	chr15:34380200-34386600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr15:34380200-34391600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr15:34380200-34391800	Weak transcription	Brain Hippocampus Middle	brain
41	chr15:34380200-34392800	Weak transcription	HSMMtube	muscle
42	chr15:34380200-34393000	Weak transcription	Ovary	ovary
43	chr15:34380200-34393400	Weak transcription	Gastric	stomach
44	chr15:34380400-34386600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:34380400-34391600	Weak transcription	Thymus	Thymus
46	chr15:34380400-34391800	Weak transcription	Left Ventricle	heart
47	chr15:34380400-34391800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr15:34380400-34391800	Weak transcription	Spleen	Spleen
49	chr15:34380400-34392400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr15:34380600-34385200	Weak transcription	Duodenum Mucosa	Duodenum

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