Variant report

Variant	rs1968902
Chromosome Location	chr16:48663974-48663975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48396664..48398744-chr16:48661857..48664145,2	K562	blood:

Variant related genes	Relation type
ENSG00000196470	Chromatin interaction

rs_ID	r²[population]
rs11640119	0.83[AMR][1000 genomes]
rs12444902	0.83[AMR][1000 genomes]
rs13330784	0.85[AMR][1000 genomes]
rs13331298	0.85[AMR][1000 genomes]
rs13332125	0.85[AMR][1000 genomes]
rs1968903	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28481630	0.84[AMR][1000 genomes]
rs4277341	0.84[AMR][1000 genomes]
rs4471681	0.84[AMR][1000 genomes]
rs7185541	0.84[AMR][1000 genomes]
rs7191225	0.84[AMR][1000 genomes]
rs7198145	0.83[AMR][1000 genomes]
rs7204345	0.83[AMR][1000 genomes]
rs74017013	0.84[AMR][1000 genomes]
rs8050844	0.84[AMR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs1968902	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48657800-48664000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr16:48657800-48664000	Weak transcription	Colon Smooth Muscle	Colon
3	chr16:48658000-48664000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:48658000-48664000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr16:48658000-48664000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr16:48658000-48664000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr16:48658000-48664000	Weak transcription	Hela-S3	cervix
8	chr16:48658000-48664000	Weak transcription	NHDF-Ad	bronchial
9	chr16:48658000-48664000	Weak transcription	Osteobl	bone
10	chr16:48658000-48664200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr16:48658000-48667200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr16:48658000-48670400	Weak transcription	Pancreas	Pancrea
13	chr16:48658600-48664000	Weak transcription	Placenta	Placenta
14	chr16:48658600-48664000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr16:48658800-48664000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr16:48658800-48664000	Weak transcription	Fetal Thymus	thymus
17	chr16:48658800-48664200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr16:48661600-48664200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr16:48662000-48664200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr16:48662000-48664200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr16:48662400-48664800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr16:48662800-48664000	Enhancers	HepG2	liver
23	chr16:48662800-48667400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr16:48663000-48664000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr16:48663000-48666400	Weak transcription	Fetal Intestine Small	intestine
26	chr16:48663400-48664000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr16:48663400-48664200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr16:48663600-48664800	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr16:48663800-48664000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr16:48663800-48664000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr16:48663800-48664000	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr16:48663800-48664400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr16:48663800-48664400	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links