Variant report

Variant	rs74017013
Chromosome Location	chr16:48664120-48664121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48396664..48398744-chr16:48661857..48664145,2	K562	blood:
2	chr16:48387653..48388232-chr16:48664055..48664936,2	K562	blood:

Variant related genes	Relation type
ENSG00000196470	Chromatin interaction

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs1039340	0.84[ASN][1000 genomes]
rs1039341	0.84[ASN][1000 genomes]
rs1039342	0.84[ASN][1000 genomes]
rs1039343	0.84[ASN][1000 genomes]
rs1039344	0.84[ASN][1000 genomes]
rs1106386	0.81[ASN][1000 genomes]
rs11076570	0.86[ASN][1000 genomes]
rs11076571	0.86[ASN][1000 genomes]
rs11076572	0.86[ASN][1000 genomes]
rs11076573	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11076578	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1115758	0.86[ASN][1000 genomes]
rs1115759	0.86[ASN][1000 genomes]
rs1120275	0.86[ASN][1000 genomes]
rs1120276	0.86[ASN][1000 genomes]
rs11495819	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs11640119	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11640463	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11641458	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11641510	0.85[ASN][1000 genomes]
rs11643272	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11644518	0.85[ASN][1000 genomes]
rs11645193	0.84[ASN][1000 genomes]
rs11647046	0.85[ASN][1000 genomes]
rs11647048	0.86[ASN][1000 genomes]
rs11648101	0.82[AMR][1000 genomes]
rs11649236	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11859909	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1224	0.84[ASN][1000 genomes]
rs12444902	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12446280	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12597928	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12598514	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12933948	0.92[AMR][1000 genomes]
rs12935540	0.81[ASN][1000 genomes]
rs13330784	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13331298	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13331902	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13332125	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13335847	0.85[ASN][1000 genomes]
rs1386040	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1386042	0.86[ASN][1000 genomes]
rs1477134	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs1486411	0.84[ASN][1000 genomes]
rs1486412	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1558815	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1564979	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1564980	0.83[AMR][1000 genomes]
rs16946340	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16946342	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17826468	0.84[ASN][1000 genomes]
rs1825683	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1872652	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1872654	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1872655	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1909765	0.86[ASN][1000 genomes]
rs1968902	0.84[AMR][1000 genomes]
rs1968903	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1987061	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2041921	0.88[AMR][1000 genomes]
rs2080507	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2080508	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs2101372	0.85[ASN][1000 genomes]
rs2129243	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2354578	0.84[ASN][1000 genomes]
rs2354579	0.86[ASN][1000 genomes]
rs28432694	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28481630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28577888	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28692806	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2883641	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36077931	0.84[ASN][1000 genomes]
rs3743779	0.84[ASN][1000 genomes]
rs3743780	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3817029	0.84[ASN][1000 genomes]
rs3826174	0.84[ASN][1000 genomes]
rs3843724	0.86[ASN][1000 genomes]
rs3848319	0.86[ASN][1000 genomes]
rs3848320	0.83[ASN][1000 genomes]
rs3848321	0.82[ASN][1000 genomes]
rs3848322	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4277341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4471681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4493038	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs4785247	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4785248	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs4785528	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs55671623	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57903644	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61098261	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6500395	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6500396	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6500397	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6500398	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6500405	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7184070	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7184144	0.83[ASN][1000 genomes]
rs7185541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185899	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7187513	0.84[ASN][1000 genomes]
rs7188741	0.86[ASN][1000 genomes]
rs7191028	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7191225	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7192297	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7194570	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7195684	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7196823	0.84[ASN][1000 genomes]
rs7197732	0.84[ASN][1000 genomes]
rs7198145	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7198773	0.83[ASN][1000 genomes]
rs7199206	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7199625	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7201196	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7204345	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044519	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8050844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8052073	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8052640	0.86[ASN][1000 genomes]
rs8053598	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8057777	0.84[ASN][1000 genomes]
rs8058362	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8059819	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs8059905	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs868792	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs871902	0.84[ASN][1000 genomes]
rs989070	0.86[ASN][1000 genomes]
rs9921737	0.84[ASN][1000 genomes]
rs9921741	0.84[ASN][1000 genomes]
rs9922356	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9922734	0.86[ASN][1000 genomes]
rs9923371	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9923753	0.85[ASN][1000 genomes]
rs9924483	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9925406	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9930199	0.84[ASN][1000 genomes]
rs9931123	0.86[ASN][1000 genomes]
rs9931737	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9933329	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9933976	0.84[ASN][1000 genomes]
rs9934626	0.86[ASN][1000 genomes]
rs9934844	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9936004	0.84[ASN][1000 genomes]
rs9936271	0.86[ASN][1000 genomes]
rs9936445	0.86[ASN][1000 genomes]
rs9936446	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9937134	0.84[ASN][1000 genomes]
rs9937568	0.86[ASN][1000 genomes]
rs9937610	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9937623	0.84[ASN][1000 genomes]
rs9938126	0.84[ASN][1000 genomes]
rs9938308	0.84[ASN][1000 genomes]
rs9938890	0.86[ASN][1000 genomes]
rs9939103	0.84[ASN][1000 genomes]
rs9941275	0.84[ASN][1000 genomes]
rs9941336	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48658000-48664200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr16:48658000-48667200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:48658000-48670400	Weak transcription	Pancreas	Pancrea
4	chr16:48658800-48664200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr16:48661600-48664200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr16:48662000-48664200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr16:48662000-48664200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:48662400-48664800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr16:48662800-48667400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr16:48663000-48666400	Weak transcription	Fetal Intestine Small	intestine
11	chr16:48663400-48664200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr16:48663600-48664800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr16:48663800-48664400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr16:48663800-48664400	Enhancers	Fetal Intestine Large	intestine
15	chr16:48664000-48664200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr16:48664000-48664200	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr16:48664000-48664200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr16:48664000-48664200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr16:48664000-48664200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr16:48664000-48664200	Enhancers	Primary T cells fromperipheralblood	blood
21	chr16:48664000-48664200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr16:48664000-48664200	Enhancers	Brain Hippocampus Middle	brain
23	chr16:48664000-48664200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr16:48664000-48664200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr16:48664000-48664200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr16:48664000-48664200	Active TSS	NH-A	brain
27	chr16:48664000-48664200	Enhancers	NHEK	skin
28	chr16:48664000-48664400	Enhancers	H1 Cell Line	embryonic stem cell
29	chr16:48664000-48664400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr16:48664000-48664400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr16:48664000-48664400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr16:48664000-48664400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr16:48664000-48664400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr16:48664000-48664400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr16:48664000-48664400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr16:48664000-48664400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr16:48664000-48664400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr16:48664000-48664400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr16:48664000-48664400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr16:48664000-48664400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr16:48664000-48664400	Enhancers	Adipose Nuclei	Adipose
42	chr16:48664000-48664400	Enhancers	Brain Cingulate Gyrus	brain
43	chr16:48664000-48664400	Flanking Active TSS	Fetal Muscle Leg	muscle
44	chr16:48664000-48664400	Enhancers	Placenta	Placenta
45	chr16:48664000-48664400	Enhancers	Fetal Stomach	stomach
46	chr16:48664000-48664400	Enhancers	Fetal Thymus	thymus
47	chr16:48664000-48664400	Enhancers	GM12878-XiMat	blood
48	chr16:48664000-48664400	Flanking Active TSS	Hela-S3	cervix
49	chr16:48664000-48664400	Enhancers	HMEC	breast
50	chr16:48664000-48664400	Flanking Active TSS	HUVEC	blood vessel

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