Variant report

Variant	rs9938308
Chromosome Location	chr16:48607229-48607230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48607171..48609962-chr16:48643575..48646048,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102921	Chromatin interaction

Extended variants
information (count: 160 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs1039340	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1039341	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1039342	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1039343	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1039344	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1106386	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11076570	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11076571	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11076572	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11076573	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11076578	0.81[EUR][1000 genomes]
rs1115758	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1115759	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1120275	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1120276	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11495819	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11640119	0.85[ASN][1000 genomes]
rs11640463	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11641458	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11641510	0.97[ASN][1000 genomes]
rs11643264	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11643272	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11644518	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11645193	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11647046	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11647048	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11648101	0.81[EUR][1000 genomes]
rs11649236	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11859909	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1224	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12444902	0.84[ASN][1000 genomes]
rs12446280	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12597928	0.81[EUR][1000 genomes]
rs12598514	0.82[EUR][1000 genomes]
rs12933948	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12935540	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13330784	0.86[ASN][1000 genomes]
rs13331298	0.84[ASN][1000 genomes]
rs13331902	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13332125	0.86[ASN][1000 genomes]
rs13335847	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1386040	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1386042	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1477134	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1486411	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1486412	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1564979	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1564980	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16946342	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17826468	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1825683	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1872652	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1872654	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1872655	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1909765	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1987061	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2041921	0.81[EUR][1000 genomes]
rs2080507	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2080508	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2101372	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2129243	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2354578	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2354579	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28432694	0.84[ASN][1000 genomes]
rs28481630	0.86[ASN][1000 genomes]
rs28577888	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2883475	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2883641	0.84[ASN][1000 genomes]
rs34813315	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36077931	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3743779	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3743780	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3817029	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3826174	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3843724	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3848319	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3848320	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3848321	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3848322	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4277341	0.83[ASN][1000 genomes]
rs4471681	0.84[ASN][1000 genomes]
rs4493038	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4785247	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4785248	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4785528	0.83[EUR][1000 genomes]
rs55671623	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55782524	0.91[EUR][1000 genomes]
rs57903644	0.83[ASN][1000 genomes]
rs61098261	0.81[ASN][1000 genomes]
rs6500395	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6500396	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6500397	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6500398	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6500405	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7184070	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7184144	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7185541	0.84[ASN][1000 genomes]
rs7187513	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7188741	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7191028	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7191225	0.86[ASN][1000 genomes]
rs7192297	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7194570	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7195684	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7196823	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7197732	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7198145	0.84[ASN][1000 genomes]
rs7198773	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7199206	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7199625	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7201196	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7204345	0.84[ASN][1000 genomes]
rs74017013	0.84[ASN][1000 genomes]
rs8044519	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8050844	0.84[ASN][1000 genomes]
rs8052073	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8052640	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8053598	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8057165	0.84[EUR][1000 genomes]
rs8057777	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8058362	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8059819	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8059905	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868792	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs871902	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs924476	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs989070	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9921737	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9921741	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9922356	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9922734	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9923371	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9923753	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9924078	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9924483	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9925406	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9927888	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9928051	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9930199	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9931123	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9931737	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933187	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9933329	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9933976	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9934626	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9934844	0.83[EUR][1000 genomes]
rs9936004	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9936271	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9936445	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9936446	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9936454	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9937134	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9937568	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9937610	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9937623	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9938126	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9938890	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9939103	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9941275	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9941336	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9938308	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48583800-48617800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:48589400-48608800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr16:48589400-48609400	Weak transcription	Thymus	Thymus
4	chr16:48589400-48609600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:48591200-48607600	Weak transcription	Hela-S3	cervix
6	chr16:48591200-48611400	Weak transcription	Fetal Intestine Small	intestine
7	chr16:48591200-48611600	Weak transcription	Fetal Brain Female	brain
8	chr16:48591400-48617200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr16:48592600-48613400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr16:48592800-48611000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr16:48593600-48607800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr16:48593800-48608800	Weak transcription	Aorta	Aorta
13	chr16:48594000-48617800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr16:48594400-48608800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr16:48595200-48609600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:48595200-48624000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr16:48595800-48609600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr16:48595800-48610600	Weak transcription	Primary B cells from cord blood	blood
19	chr16:48596000-48607600	Weak transcription	Fetal Lung	lung
20	chr16:48596000-48609400	Weak transcription	Fetal Thymus	thymus
21	chr16:48596000-48613600	Weak transcription	Fetal Intestine Large	intestine
22	chr16:48596000-48624400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr16:48596200-48607800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr16:48596200-48607800	Weak transcription	Fetal Kidney	kidney
25	chr16:48596200-48610800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr16:48596200-48612800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr16:48596200-48612800	Weak transcription	Placenta	Placenta
28	chr16:48596200-48615200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr16:48596400-48607800	Weak transcription	A549	lung
30	chr16:48596400-48608200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr16:48596400-48609600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr16:48596400-48610600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr16:48596400-48611800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr16:48596400-48613400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr16:48596400-48615000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr16:48596400-48617200	Weak transcription	NH-A	brain
37	chr16:48596600-48607800	Weak transcription	Colon Smooth Muscle	Colon
38	chr16:48596600-48608600	Weak transcription	Brain Angular Gyrus	brain
39	chr16:48596600-48612200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr16:48596800-48607600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr16:48596800-48609400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr16:48596800-48610600	Weak transcription	HSMM	muscle
43	chr16:48596800-48624400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr16:48597000-48607800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr16:48597200-48607400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr16:48597600-48608800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr16:48598800-48607800	Weak transcription	Fetal Heart	heart
48	chr16:48600800-48609600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr16:48601200-48610600	Weak transcription	HepG2	liver
50	chr16:48602000-48611600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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