Variant report

Variant	rs3848320
Chromosome Location	chr16:48619827-48619828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:48617180..48622769-chr16:48640703..48644827,6	MCF-7	breast:
2	chr16:48619120..48621788-chr16:48623609..48625934,2	K562	blood:
3	chr16:48618735..48620487-chr16:48642721..48644444,2	K562	blood:

Variant related genes	Relation type
ENSG00000102921	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs1039340	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1039341	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1039342	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1039343	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1039344	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1106386	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11076570	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11076571	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11076572	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11076573	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1115758	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1115759	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1120275	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1120276	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11640119	0.84[ASN][1000 genomes]
rs11640463	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11641458	0.81[EUR][1000 genomes]
rs11641510	0.96[ASN][1000 genomes]
rs11643264	0.83[EUR][1000 genomes]
rs11643272	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11644518	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11645193	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11647046	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11647048	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11649236	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11859909	0.81[EUR][1000 genomes]
rs1224	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12444902	0.83[ASN][1000 genomes]
rs12446280	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12935540	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13330784	0.85[ASN][1000 genomes]
rs13331298	0.83[ASN][1000 genomes]
rs13331902	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13332125	0.85[ASN][1000 genomes]
rs13335847	0.82[EUR][1000 genomes]
rs1386040	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1386042	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1486411	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1486412	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1564979	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1564980	0.82[AMR][1000 genomes]
rs16946342	0.81[EUR][1000 genomes]
rs17826468	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1825683	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1872652	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1872654	0.81[EUR][1000 genomes]
rs1872655	0.81[EUR][1000 genomes]
rs1909765	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1987061	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2101372	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2129243	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2354578	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2354579	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28432694	0.83[ASN][1000 genomes]
rs28481630	0.85[ASN][1000 genomes]
rs28577888	0.82[EUR][1000 genomes]
rs2883475	0.84[EUR][1000 genomes]
rs2883641	0.83[ASN][1000 genomes]
rs34813315	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36077931	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3743779	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3743780	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3817029	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3826174	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3843724	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3848319	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3848321	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3848322	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4277341	0.82[ASN][1000 genomes]
rs4471681	0.83[ASN][1000 genomes]
rs55671623	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55782524	0.84[EUR][1000 genomes]
rs57903644	0.82[ASN][1000 genomes]
rs61098261	0.80[ASN][1000 genomes]
rs6500395	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6500396	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6500397	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6500398	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7184144	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7185541	0.83[ASN][1000 genomes]
rs7187513	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7188741	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7191028	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7191225	0.85[ASN][1000 genomes]
rs7196823	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7197732	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7198145	0.83[ASN][1000 genomes]
rs7198773	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7199625	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7204345	0.83[ASN][1000 genomes]
rs74017013	0.83[ASN][1000 genomes]
rs8044519	0.81[EUR][1000 genomes]
rs8050844	0.83[ASN][1000 genomes]
rs8052640	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8053598	0.81[EUR][1000 genomes]
rs8057165	0.80[EUR][1000 genomes]
rs8057777	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8058362	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8059905	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs868792	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs871902	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs924476	0.83[EUR][1000 genomes]
rs989070	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9921737	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9921741	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9922356	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9922734	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9923371	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9923753	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9924078	0.83[EUR][1000 genomes]
rs9924483	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9925406	0.81[EUR][1000 genomes]
rs9927888	0.84[EUR][1000 genomes]
rs9928051	0.83[EUR][1000 genomes]
rs9930199	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9931123	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9931737	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9933187	0.83[EUR][1000 genomes]
rs9933329	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9933976	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9934626	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9934844	0.80[EUR][1000 genomes]
rs9936004	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9936271	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9936445	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9936446	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9936454	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9937134	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9937568	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9937610	0.81[EUR][1000 genomes]
rs9937623	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9938126	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9938308	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9938890	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9939103	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9941275	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9941336	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48595200-48624000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr16:48596000-48624400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:48596800-48624400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr16:48605000-48630200	Weak transcription	Spleen	Spleen
5	chr16:48609800-48624200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:48609800-48624200	Weak transcription	Fetal Thymus	thymus
7	chr16:48609800-48624400	Weak transcription	Thymus	Thymus
8	chr16:48611000-48624400	Weak transcription	Psoas Muscle	Psoas
9	chr16:48611000-48624400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr16:48611800-48626000	Weak transcription	Aorta	Aorta
11	chr16:48612200-48624200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr16:48612400-48621000	Weak transcription	Ovary	ovary
13	chr16:48612400-48624400	Weak transcription	Esophagus	oesophagus
14	chr16:48612400-48630200	Weak transcription	Gastric	stomach
15	chr16:48613000-48620000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr16:48613200-48621000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr16:48615200-48624400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr16:48615600-48622600	Weak transcription	HUVEC	blood vessel
19	chr16:48615600-48624400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr16:48615600-48624400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr16:48616400-48624400	Weak transcription	HepG2	liver
22	chr16:48616600-48624400	Weak transcription	Primary B cells from cord blood	blood
23	chr16:48616800-48620200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr16:48617000-48620200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr16:48617000-48624200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr16:48617600-48621000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr16:48618000-48620000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr16:48618000-48621000	Weak transcription	Left Ventricle	heart
29	chr16:48618000-48623400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr16:48618000-48624200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr16:48618000-48624400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr16:48618000-48625000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr16:48618000-48631600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr16:48618200-48620000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr16:48618200-48620000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr16:48618200-48620600	Enhancers	NHEK	skin
37	chr16:48618200-48621000	Weak transcription	Right Ventricle	heart
38	chr16:48618200-48622400	Weak transcription	Dnd41	blood
39	chr16:48618200-48622600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr16:48618200-48624000	Weak transcription	Right Atrium	heart
41	chr16:48618200-48624200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr16:48618200-48624400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr16:48618200-48626000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr16:48618200-48630400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr16:48618200-48640400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr16:48618400-48620000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr16:48618400-48620800	Weak transcription	Adipose Nuclei	Adipose
48	chr16:48618400-48621000	Weak transcription	Fetal Lung	lung
49	chr16:48618600-48620000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr16:48618600-48620000	Weak transcription	HSMMtube	muscle

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