Variant report

Variant	rs1987061
Chromosome Location	chr16:48639104-48639105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48638871..48640791-chr16:48642625..48644509,2	K562	blood:
2	chr16:48636374..48639117-chr16:48642848..48644889,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102921	Chromatin interaction

Extended variants
information (count: 164 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs1039340	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1039341	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1039342	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1039343	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1039344	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1106386	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11076570	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11076571	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11076572	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11076573	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11076578	0.85[EUR][1000 genomes]
rs1115758	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1115759	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1120275	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1120276	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11495819	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11640119	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11640463	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11641458	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11641510	0.89[ASN][1000 genomes]
rs11643264	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11643272	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11644518	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11645193	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11647046	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11647048	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11648101	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11649236	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11859909	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1224	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12444902	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12446280	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12597928	0.85[EUR][1000 genomes]
rs12598514	0.85[EUR][1000 genomes]
rs12933948	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12935540	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13330784	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13331298	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13331902	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13332125	0.96[ASN][1000 genomes]
rs13335847	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1386040	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1386042	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1477134	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1486411	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1486412	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1558815	0.82[EUR][1000 genomes]
rs1564979	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1564980	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16946340	0.83[AMR][1000 genomes]
rs16946342	0.91[EUR][1000 genomes]
rs17826468	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1825683	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1872652	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1872654	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1872655	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1909765	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1968903	0.83[ASN][1000 genomes]
rs2041921	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2080507	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2080508	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2101372	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2129243	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2354578	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2354579	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28432694	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28481630	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28577888	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28692806	0.83[EUR][1000 genomes]
rs2883475	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2883641	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34813315	0.85[EUR][1000 genomes]
rs36077931	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3743779	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3743780	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3817029	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3826174	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3843724	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3848319	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3848320	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3848321	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3848322	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4277341	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4471681	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4493038	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4785247	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4785248	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4785528	0.86[EUR][1000 genomes]
rs55671623	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55782524	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57903644	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61098261	0.91[ASN][1000 genomes]
rs6500395	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6500396	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6500397	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6500398	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6500405	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7184070	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7184144	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7185541	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7185899	0.83[EUR][1000 genomes]
rs7187513	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7188741	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7191028	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7191225	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7192297	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7194570	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7195684	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7196823	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7197732	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7198145	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7198773	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7199206	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7199625	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7201196	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7204345	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74017013	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8044519	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8050844	0.94[ASN][1000 genomes]
rs8052073	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8052640	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8053598	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8057777	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8058362	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8059819	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8059905	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs868792	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871902	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs924476	0.86[EUR][1000 genomes]
rs989070	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9921737	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9921741	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9922356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922734	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9923371	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9923753	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9924078	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9924483	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9925406	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9927888	0.86[EUR][1000 genomes]
rs9928051	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9930199	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9931123	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9931737	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9933187	0.86[EUR][1000 genomes]
rs9933329	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9933976	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9934626	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9934844	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9936004	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936271	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9936445	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9936446	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9936454	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9937134	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9937568	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9937610	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9937623	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9938126	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9938308	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9938890	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9939103	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9941275	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9941336	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48618200-48640400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr16:48626400-48640400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr16:48628400-48639800	Weak transcription	A549	lung
4	chr16:48629800-48639800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr16:48629800-48640000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr16:48629800-48641800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr16:48630000-48641200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr16:48630000-48641600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr16:48630200-48639200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr16:48630400-48639800	Weak transcription	Fetal Thymus	thymus
11	chr16:48630400-48642600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr16:48630600-48641000	Weak transcription	HSMMtube	muscle
13	chr16:48631800-48639400	Weak transcription	Thymus	Thymus
14	chr16:48631800-48639800	Weak transcription	Fetal Stomach	stomach
15	chr16:48632000-48639600	Weak transcription	Placenta	Placenta
16	chr16:48632000-48640200	Weak transcription	HSMM	muscle
17	chr16:48632200-48639200	Weak transcription	HMEC	breast
18	chr16:48632200-48639400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr16:48632200-48639400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr16:48632200-48639800	Weak transcription	Dnd41	blood
21	chr16:48632200-48641000	Weak transcription	Osteobl	bone
22	chr16:48632400-48639600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr16:48632400-48640400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr16:48632800-48640800	Weak transcription	Hela-S3	cervix
25	chr16:48633000-48639800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr16:48633200-48639400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr16:48633400-48640400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr16:48634200-48642200	Weak transcription	HUVEC	blood vessel
29	chr16:48634400-48642200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr16:48634600-48639400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr16:48635000-48641200	Enhancers	Stomach Mucosa	stomach
32	chr16:48635200-48640800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr16:48635400-48639200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr16:48635400-48641200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr16:48635400-48641400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr16:48635600-48639800	Enhancers	Primary T cells fromperipheralblood	blood
37	chr16:48635600-48640600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr16:48635600-48641000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr16:48635600-48642400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr16:48635600-48642400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr16:48635800-48642400	Enhancers	Right Atrium	heart
42	chr16:48636000-48639400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr16:48636600-48639400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr16:48636600-48642400	Enhancers	Lung	lung
45	chr16:48636600-48642600	Enhancers	Spleen	Spleen
46	chr16:48636600-48642800	Enhancers	Left Ventricle	heart
47	chr16:48636800-48640400	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr16:48636800-48641000	Enhancers	Adipose Nuclei	Adipose
49	chr16:48636800-48642600	Enhancers	Psoas Muscle	Psoas
50	chr16:48637000-48639400	Enhancers	HepG2	liver

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