Variant report

Variant rs6500396
Chromosome Location chr16:48625458-48625459
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:48605000-48630200 Weak transcription Spleen Spleen
2 chr16:48611800-48626000 Weak transcription Aorta Aorta
3 chr16:48612400-48630200 Weak transcription Gastric stomach
4 chr16:48618000-48631600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr16:48618200-48626000 Weak transcription Stomach Smooth Muscle stomach
6 chr16:48618200-48630400 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr16:48618200-48640400 Weak transcription Rectal Smooth Muscle rectum
8 chr16:48618800-48625800 Weak transcription Brain Anterior Caudate brain
9 chr16:48619000-48626800 Weak transcription Osteobl bone
10 chr16:48619200-48631800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr16:48620400-48625800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr16:48621200-48631400 Weak transcription Brain Angular Gyrus brain
13 chr16:48621400-48625800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr16:48622400-48632800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr16:48622600-48632600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr16:48623200-48626000 Strong transcription Primary T cells from cord blood blood
17 chr16:48623200-48626200 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
18 chr16:48623200-48627000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr16:48623400-48626400 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr16:48623400-48629000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
21 chr16:48623600-48626000 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr16:48623600-48629600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr16:48623600-48629800 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr16:48623800-48626800 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr16:48624000-48626600 ZNF genes & repeats H1 Cell Line embryonic stem cell
26 chr16:48624000-48627000 Enhancers Colon Smooth Muscle Colon
27 chr16:48624000-48628400 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr16:48624200-48626400 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
29 chr16:48624200-48626400 ZNF genes & repeats Fetal Muscle Leg muscle
30 chr16:48624200-48628600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr16:48624400-48625600 Strong transcription HepG2 liver
32 chr16:48624400-48625800 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
33 chr16:48624400-48625800 Enhancers Liver Liver
34 chr16:48624400-48626200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr16:48624400-48628000 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
36 chr16:48624400-48630600 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
37 chr16:48624400-48632200 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
38 chr16:48624600-48625600 Strong transcription Primary T helper naive cells fromperipheralblood blood
39 chr16:48624600-48625800 Strong transcription A549 lung
40 chr16:48624600-48626600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr16:48624600-48627400 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr16:48624600-48627400 ZNF genes & repeats NHEK skin
43 chr16:48624600-48628800 ZNF genes & repeats GM12878-XiMat blood
44 chr16:48624600-48630200 Weak transcription Pancreas Pancrea
45 chr16:48624800-48625800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr16:48624800-48625800 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr16:48624800-48625800 Weak transcription Psoas Muscle Psoas
48 chr16:48624800-48625800 Weak transcription Right Atrium heart
49 chr16:48624800-48625800 Weak transcription Right Ventricle heart
50 chr16:48624800-48626000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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