Variant report

Variant	rs1558815
Chromosome Location	chr16:48704869-48704870
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11076573	0.82[EUR][1000 genomes]
rs11076578	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11495819	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11640119	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11640463	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11641458	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11643272	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11648101	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11649236	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11859909	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12444902	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12446280	0.81[AMR][1000 genomes]
rs12597928	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12598514	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12933948	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13330784	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13331298	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13331902	0.81[AMR][1000 genomes]
rs13332125	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1386040	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1477134	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1486412	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1564979	0.82[EUR][1000 genomes]
rs1564980	0.82[AMR][1000 genomes]
rs16946340	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16946342	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1825683	0.81[EUR][1000 genomes]
rs1872652	0.80[EUR][1000 genomes]
rs1872654	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1872655	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1987061	0.82[EUR][1000 genomes]
rs2041921	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2080507	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2080508	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2101372	0.80[EUR][1000 genomes]
rs2129243	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28432694	0.82[AMR][1000 genomes]
rs28481630	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28577888	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28692806	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2883475	0.81[EUR][1000 genomes]
rs3743780	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3848322	0.81[AMR][1000 genomes]
rs4277341	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4471681	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4493038	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4785247	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4785248	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4785528	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55671623	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6500395	0.80[EUR][1000 genomes]
rs6500396	0.81[AMR][1000 genomes]
rs6500397	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6500398	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6500405	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7184070	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7185541	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7185899	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7191028	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7191225	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7192297	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7194570	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7195684	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7198145	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7199206	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7199625	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7201196	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7204345	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74017013	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8044519	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8050844	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8052073	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8053598	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8058362	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8059819	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs868792	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs924476	0.81[EUR][1000 genomes]
rs9922356	0.82[EUR][1000 genomes]
rs9923371	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9924078	0.80[EUR][1000 genomes]
rs9924483	0.82[EUR][1000 genomes]
rs9925406	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9928051	0.80[EUR][1000 genomes]
rs9931123	0.80[EUR][1000 genomes]
rs9931737	0.80[EUR][1000 genomes]
rs9933329	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9934844	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9936446	0.82[EUR][1000 genomes]
rs9936454	0.80[EUR][1000 genomes]
rs9937610	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9941336	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1558815	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48704400-48705400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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