Variant report

Variant	rs28577888
Chromosome Location	chr16:48673281-48673282
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 159 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs1039340	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1039341	0.82[EUR][1000 genomes]
rs1039342	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1039343	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1039344	0.81[EUR][1000 genomes]
rs1106386	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11076570	0.82[EUR][1000 genomes]
rs11076571	0.82[EUR][1000 genomes]
rs11076572	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11076573	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11076578	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1115758	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1115759	0.82[EUR][1000 genomes]
rs1120275	0.82[EUR][1000 genomes]
rs1120276	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11495819	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11640119	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs11640463	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11641458	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11643264	0.83[EUR][1000 genomes]
rs11643272	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11644518	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11645193	0.82[EUR][1000 genomes]
rs11647046	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11647048	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11648101	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11649236	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11859909	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1224	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12444902	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12446280	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12597928	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12598514	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12926465	0.91[ASN][1000 genomes]
rs12933948	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13330784	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs13331298	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs13331902	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13332125	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1386040	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1386042	0.82[EUR][1000 genomes]
rs1477134	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486411	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1486412	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1558815	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1564979	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1564980	0.85[AMR][1000 genomes]
rs16946340	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16946342	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17826468	0.81[EUR][1000 genomes]
rs1825683	0.86[EUR][1000 genomes]
rs1872652	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1872654	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872655	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909765	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1987061	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2041921	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2080507	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2080508	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2101372	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2129243	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2354578	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2354579	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28432694	0.87[AMR][1000 genomes]
rs28481630	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28692806	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2883475	0.84[EUR][1000 genomes]
rs2883641	0.84[AMR][1000 genomes]
rs36077931	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3743779	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3743780	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3817029	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3826174	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3843724	0.83[EUR][1000 genomes]
rs3848319	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3848320	0.82[EUR][1000 genomes]
rs3848321	0.83[EUR][1000 genomes]
rs3848322	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4277341	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4471681	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4493038	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4785247	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4785248	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4785528	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671623	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55782524	0.83[EUR][1000 genomes]
rs57903644	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6500395	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6500396	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6500397	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6500398	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6500405	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7184070	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7184144	0.82[EUR][1000 genomes]
rs7185541	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7185899	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7187513	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7188741	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7191028	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7191225	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7192297	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7194570	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195684	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7196823	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7197732	0.81[EUR][1000 genomes]
rs7198145	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7198773	0.82[EUR][1000 genomes]
rs7199206	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7199625	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7201196	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7204345	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs74017013	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8044519	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8050844	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8052073	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8052640	0.82[EUR][1000 genomes]
rs8053598	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8057777	0.81[EUR][1000 genomes]
rs8058362	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8059819	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8059905	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs868792	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs871902	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs924476	0.83[EUR][1000 genomes]
rs989070	0.82[EUR][1000 genomes]
rs9921737	0.82[EUR][1000 genomes]
rs9921741	0.82[EUR][1000 genomes]
rs9922356	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9922734	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9923371	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9923753	0.84[EUR][1000 genomes]
rs9924078	0.84[EUR][1000 genomes]
rs9924483	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9925406	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927888	0.83[EUR][1000 genomes]
rs9928051	0.84[EUR][1000 genomes]
rs9930199	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9931123	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9931737	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9933187	0.83[EUR][1000 genomes]
rs9933329	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9933976	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9934626	0.82[EUR][1000 genomes]
rs9934844	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9936004	0.81[EUR][1000 genomes]
rs9936271	0.82[EUR][1000 genomes]
rs9936445	0.84[EUR][1000 genomes]
rs9936446	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9936454	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9937134	0.82[EUR][1000 genomes]
rs9937568	0.83[EUR][1000 genomes]
rs9937610	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9937623	0.81[EUR][1000 genomes]
rs9938126	0.81[EUR][1000 genomes]
rs9938308	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9938890	0.82[EUR][1000 genomes]
rs9939103	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9941275	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9941336	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28577888	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48664000-48674000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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