Variant report

Variant	rs1564979
Chromosome Location	chr16:48647017-48647018
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr16:48646561-48647681	NB4	blood:	n/a	n/a
2	POLR2A	chr16:48646848-48647289	GM12892	blood:	n/a	n/a
3	RELA	chr16:48646569-48647717	GM19099	blood:	n/a	n/a
4	POLR2A	chr16:48646864-48647254	GM12891	blood:	n/a	n/a
5	POLR2A	chr16:48646775-48647379	GM12892	blood:	n/a	n/a
6	POLR2A	chr16:48646856-48647390	GM12892	blood:	n/a	n/a
7	POLR2A	chr16:48646838-48647217	GM12892	blood:	n/a	n/a
8	POLR2A	chr16:48646939-48647184	GM12878	blood:	n/a	n/a
9	POLR2A	chr16:48646643-48647325	GM12878	blood:	n/a	n/a
10	EBF1	chr16:48646933-48647281	GM12878	blood:	n/a	n/a
11	RUNX3	chr16:48646544-48647368	GM12878	blood:	n/a	n/a
12	POLR2A	chr16:48646844-48647304	GM12891	blood:	n/a	n/a
13	RUNX3	chr16:48646549-48647331	GM12878	blood:	n/a	n/a
14	NFIC	chr16:48646452-48647152	GM12878	blood:	n/a	n/a
15	POLR2A	chr16:48646945-48647167	GM12878	blood:	n/a	n/a
16	POLR2A	chr16:48646639-48647473	GM12891	blood:	n/a	n/a
17	POLR2A	chr16:48646804-48647393	GM12878	blood:	n/a	n/a
18	IKZF1	chr16:48646545-48647130	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:48263677..48266264-chr16:48645386..48647099,2	MCF-7	breast:
2	chr16:48643568..48646038-chr16:48646308..48649232,3	MCF-7	breast:
3	chr16:48630551..48632810-chr16:48645142..48647127,2	MCF-7	breast:
4	chr16:48388738..48391229-chr16:48644579..48647444,2	MCF-7	breast:

No data

Variant related genes	Relation type
N4BP1	TF binding region
ENSG00000102921	Chromatin interaction
ENSG00000102910	Chromatin interaction
ENSG00000121270	Chromatin interaction

Extended variants
information (count: 168 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs1039340	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039341	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039342	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039343	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1106386	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11076570	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076571	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076573	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11076578	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11076579	0.81[CHD][hapmap]
rs1115758	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1115759	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1120275	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1120276	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11495819	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11640119	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11640463	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11641458	0.95[CEU][hapmap];0.92[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11641510	0.87[ASN][1000 genomes]
rs11643264	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11643272	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11644518	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11645193	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11647046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11647048	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11648101	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11649236	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11859909	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11860514	0.81[CHD][hapmap]
rs11861584	0.81[CHD][hapmap]
rs1224	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12444902	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12446280	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12597928	0.85[EUR][1000 genomes]
rs12598514	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12933948	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12935540	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13330784	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13331298	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13331902	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332125	0.98[ASN][1000 genomes]
rs13335847	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1386040	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1386042	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1477134	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1486411	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1486412	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1558815	0.82[EUR][1000 genomes]
rs1564980	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16946340	0.92[CHB][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16946342	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17826468	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1825683	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1872652	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872654	0.96[CEU][hapmap];0.92[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1872655	0.96[CEU][hapmap];0.92[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1909765	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1968903	0.85[ASN][1000 genomes]
rs1987061	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2041921	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2080507	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2080508	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2101372	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2129243	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2354578	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2354579	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28432694	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28481630	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28577888	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28692806	0.83[EUR][1000 genomes]
rs2883475	0.96[CEU][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2883641	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34813315	0.85[EUR][1000 genomes]
rs36077931	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3743779	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3743780	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3817029	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3826174	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3843724	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3848319	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3848320	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3848321	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3848322	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4277341	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4471681	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4493038	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4785247	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4785248	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4785528	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55671623	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55782524	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57903644	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61098261	0.93[ASN][1000 genomes]
rs6500395	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6500396	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6500397	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6500398	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6500405	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7184070	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7184144	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7185541	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7185899	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7187513	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7188741	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7191028	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7191225	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7192297	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7194570	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7195684	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7196823	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7197732	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7198145	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7198773	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7199206	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7199625	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201196	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7204345	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74017013	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8044519	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8050844	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8052073	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8052640	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8053598	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8057777	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8058362	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8059819	0.96[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8059905	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs868792	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs871902	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs904818	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs924476	0.86[EUR][1000 genomes]
rs989070	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9921737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9921741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9922356	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9922734	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9923371	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9923753	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9924078	0.96[CEU][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9924483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9925406	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9927888	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs9928051	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9930199	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9931123	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9931737	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9933187	0.96[CEU][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes]
rs9933329	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9933976	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9934626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9934844	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9936004	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9936271	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936445	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9936446	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936454	0.95[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9937134	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9937568	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9937610	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9937623	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938126	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938308	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9938890	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9939103	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9941275	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9941336	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1564979	N4BP1	cis	multi-tissue	Pritchard

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48644200-48647800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr16:48644200-48655400	Weak transcription	Spleen	Spleen
3	chr16:48644600-48647200	Weak transcription	Fetal Lung	lung
4	chr16:48644600-48647200	Weak transcription	Hela-S3	cervix
5	chr16:48644600-48647200	Weak transcription	HUVEC	blood vessel
6	chr16:48644600-48647600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr16:48644600-48647600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:48644600-48647800	Enhancers	Primary B cells from cord blood	blood
9	chr16:48644600-48647800	Enhancers	Fetal Thymus	thymus
10	chr16:48644600-48647800	Enhancers	Stomach Mucosa	stomach
11	chr16:48644600-48647800	Enhancers	HMEC	breast
12	chr16:48644600-48648800	Enhancers	Placenta	Placenta
13	chr16:48644600-48650200	Weak transcription	Right Ventricle	heart
14	chr16:48644600-48650400	Weak transcription	Fetal Heart	heart
15	chr16:48644600-48656600	Weak transcription	Esophagus	oesophagus
16	chr16:48644800-48647200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr16:48644800-48647200	Enhancers	Fetal Intestine Small	intestine
18	chr16:48644800-48647400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr16:48644800-48647400	Enhancers	Fetal Muscle Leg	muscle
20	chr16:48644800-48647600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr16:48644800-48647800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr16:48644800-48647800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr16:48644800-48647800	Enhancers	Dnd41	blood
24	chr16:48644800-48648600	Enhancers	Fetal Intestine Large	intestine
25	chr16:48644800-48651600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr16:48645000-48647800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr16:48645000-48651400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr16:48645200-48647600	Enhancers	Colonic Mucosa	Colon
29	chr16:48645200-48647800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr16:48645200-48647800	Enhancers	Adipose Nuclei	Adipose
31	chr16:48645200-48647800	Enhancers	NHEK	skin
32	chr16:48645200-48651600	Weak transcription	NH-A	brain
33	chr16:48645400-48647600	Enhancers	Primary B cells from peripheral blood	blood
34	chr16:48645400-48647600	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr16:48645400-48647600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr16:48645400-48647600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr16:48645400-48647600	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr16:48645400-48647800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr16:48645400-48647800	Enhancers	K562	blood
40	chr16:48645400-48648000	Enhancers	Thymus	Thymus
41	chr16:48645400-48651400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr16:48645400-48651400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr16:48645400-48651400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr16:48645600-48647600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr16:48645800-48650600	Weak transcription	Brain Anterior Caudate	brain
46	chr16:48645800-48651400	Weak transcription	Fetal Brain Female	brain
47	chr16:48646000-48647600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr16:48646000-48647800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr16:48646000-48650000	Weak transcription	Left Ventricle	heart
50	chr16:48646000-48650200	Weak transcription	Lung	lung

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